Cluster no. 181

Cluster no. 181

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Cluster is part of supercluster: 6

Cluster characteristics:

size	1180
size_real	1180
ecount	13760
supercluster	6
annotations_summary	0.17% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
pair_completeness	0.226611226611227
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00508474576271186
satellite_probability	1.02273405921547e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1
S5	347
S4	392
S7	2
S9	0
S6	438
S2	0
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	1.5	3.5	0	0	0	0	0	0
S5	1.5	1020.0	1410.0	11	0	1230	0	0	0
S4	3.5	1410.0	2040.0	15	0	1850	0	0	0
S7	0.0	11.0	15.0	0	0	11	0	0	0
S9	0.0	0.0	0.0	0	0	0	0	0	0
S6	0.0	1230.0	1850.0	11	0	1630	0	0	0
S2	0.0	0.0	0.0	0	0	0	0	0	0
S1	0.0	0.0	0.0	0	0	0	0	0	0
S3	0.0	0.0	0.0	0	0	0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.00	1.120	1.810	0.000	NA	0.000	NA	NA	NA
S5	1.12	1.040	0.991	1.110	NA	0.975	NA	NA	NA
S4	1.81	0.991	0.992	1.050	NA	1.020	NA	NA	NA
S7	0.00	1.110	1.050	0.000	NA	0.865	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	0.00	0.975	1.020	0.865	NA	1.000	NA	NA	NA
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-INT SIRE Ty1-INT 2 0.0017

clusters with similarity:

Cluster	Number of similarity hits

61

46

clusters connected through mates:

Cluster	Number of shared read pairs	k

61	270	0.223
128	42	0.0423
14	5	0.00253
1300	5	0.0131
3	4	0.00125
731	4	0.0104
942	4	0.0106
4830	4	0.0107
2360	3	0.008
3060	3	0.008
3470	3	0.008
6	2	0.000663
4840	2	0.00533
5630	2	0.00535
6740	2	0.00534
7290	2	0.00534
7630	2	0.00535
7740	2	0.00535
8380	2	0.00535
8460	2	0.00535
18700	2	0.00535
21000	2	0.00536
22600	2	0.00536
35000	2	0.00536
52800	2	0.00536
60800	2	0.00536
66300	2	0.00536
16	1	0.00113
26	1	0.00077
29	1	0.000709
34	1	0.000646
39	1	0.000752
55	1	0.000918
56	1	0.00101
67	1	0.000815
84	1	0.000895
87	1	0.00101
90	1	0.000959
95	1	0.00109
120	1	0.00129
132	1	0.00203
135	1	0.00168
281	1	0.00227
1850	1	0.00265
3770	1	0.00267
4460	1	0.00267
4480	1	0.00267
4750	1	0.00267
5360	1	0.00267
5820	1	0.00267
6100	1	0.00268
6150	1	0.00267
6380	1	0.00268
7030	1	0.00267
7260	1	0.00267
7350	1	0.00267
9370	1	0.00267
9670	1	0.00267
10200	1	0.00267
10400	1	0.00267
11100	1	0.00267
13800	1	0.00268
13800	1	0.00268
13900	1	0.00268
14100	1	0.00268
15300	1	0.00268
15400	1	0.00268
16200	1	0.00268
16400	1	0.00268
17800	1	0.00268
18000	1	0.00268
18000	1	0.00268
18400	1	0.00268
18500	1	0.00268
20200	1	0.00268
21100	1	0.00268
21300	1	0.00268
23000	1	0.00268
25200	1	0.00268
25400	1	0.00268
25500	1	0.00268
25600	1	0.00268
29000	1	0.00268
31100	1	0.00268
31900	1	0.00268
32200	1	0.00268
34800	1	0.00268
35300	1	0.00268
36800	1	0.00268
43100	1	0.00268
43700	1	0.00268
44200	1	0.00268
46500	1	0.00268
47100	1	0.00268
47100	1	0.00268
48700	1	0.00268
50100	1	0.00268
50500	1	0.00268
53700	1	0.00268
53900	1	0.00268
57000	1	0.00268
57200	1	0.00268
59200	1	0.00268
60600	1	0.00268
61400	1	0.00268
63300	1	0.00268

CL181 ----> CL61

No. of shared pairs: :270

CL181 ----> CL128

No. of shared pairs: :42