Cluster no. 180

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Cluster is part of supercluster: 87

Cluster characteristics:

size 1221
size_real 1221
ecount 40502
supercluster 87
annotations_summary
pair_completeness 0.91679748822606
pbs_score 0.0
TR_score 0.718593960529445
TR_monomer_length 750.0
loop_index 0.963963963963964
satellite_probability 0.908438291017558
consensus 
AACAAAAATATACGAAGATCAAAAAAGGCCACGATAATATTCCGCTAAAAAGATTGAAATTGGATTTAAAATTGGATAAA
ACAGGAAACCGAAAGATATTCGCAGACTGAAAAAGTAGGTTACTTACAGGCTAAGTAATCATATAAAACACCCTCAGCCG
TTCGAAATTCTAAGGTATCAAATGCGTTTAACATTCTCCTCGAAGTCACTTTGTCGTGATGTTGTAATATTGGTAAAAAG
ACCGCGCGTGTTGATGAATATGAGCAAAACAATGAGGTACGGAAAACGAGGAAGACAGAACGGTCGTAAAAAAAGAACAT
TTATTGCGCTATAGCTTCAGTAGACAAGCTTTTGACCCATATCCTCATTTATTCCCTCGGTGATCCATAATATCTTTAAT
ATCGAGTGCTACAGTGTGAGCATGCTCGAGCGTTTCGCGGAGATCGAAGACTTTCGCCAATACCGTCGAATCGGATCAGC
GAGCGGTCCGTCGCTTTCTTCCGTTTCTTCAAACGGCCATAACTTTTGACTCGTTTGGAGTTACGGGAGCCACAACCTAT
CAAAACGAAGCTCTTTCCATGTTCTACGTTTCTAACGGTTCGAATTGTCATGGATCGGTTTTGTGTGCAGAATAATTCCA
TCTTAAGTTTTTTCTACAGCTCGGATGTTTTCGTTCATAAATTTATTCCACGGAGTTTGTGGTATAAATAGTCGGACTAA
ATCGATGTAAACCTAGAAGAACGACAAAAA

  

  

    TAREAN_annotation
    Putative satellite (high confidence)
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
      3
  

  

    S5
      4
  

  

    S4
      0
  

  

    S7
      4
  

  

    S9
      2
  

  

    S6
      3
  

  

    S2
    388
  

  

    S1
    364
  

  

    S3
    453
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S5
    S4
    S7
    S9
    S6
    S2
    S1
    S3
  

   

    S8
     0.0
     0.0
    0
     0.0
     0.0
    0.5
       6.5
       6.0
      11.0
  

  

    S5
     0.0
     1.0
    0
     0.0
     0.0
    0.0
      38.5
      43.5
      42.0
  

  

    S4
     0.0
     0.0
    0
     0.0
     0.0
    0.0
       0.0
       0.0
       0.0
  

  

    S7
     0.0
     0.0
    0
     0.0
     0.5
    0.0
      31.5
      31.5
      43.0
  

  

    S9
     0.0
     0.0
    0
     0.5
     0.0
    0.0
      33.0
      37.5
      29.0
  

  

    S6
     0.5
     0.0
    0
     0.0
     0.0
    0.0
       1.5
       4.0
       4.5
  

  

    S2
     6.5
    38.5
    0
    31.5
    33.0
    1.5
    3700.0
    3810.0
    4670.0
  

  

    S1
     6.0
    43.5
    0
    31.5
    37.5
    4.0
    3810.0
    3850.0
    4700.0
  

  

    S3
    11.0
    42.0
    0
    43.0
    29.0
    4.5
    4670.0
    4700.0
    5870.0
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S5
    S4
    S7
    S9
    S6
    S2
    S1
    S3
  

   

    S8
     0.000
    0.000
    NA
    0.000
    0.000
    80.400
    0.892
    0.811
    1.210
  

  

    S5
     0.000
    2.590
    NA
    0.000
    0.000
     0.000
    1.010
    1.130
    0.886
  

  

    S4
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
  

  

    S7
     0.000
    0.000
    NA
    0.000
    1.900
     0.000
    0.974
    0.960
    1.060
  

  

    S9
     0.000
    0.000
    NA
    1.900
    0.000
     0.000
    1.090
    1.220
    0.764
  

  

    S6
    80.400
    0.000
    NA
    0.000
    0.000
     0.000
    0.471
    1.240
    1.130
  

  

    S2
     0.892
    1.010
    NA
    0.974
    1.090
     0.471
    0.993
    1.010
    1.000
  

  

    S1
     0.811
    1.130
    NA
    0.960
    1.220
     1.240
    1.010
    1.000
    0.993
  

  

    S3
     1.210
    0.886
    NA
    1.060
    0.764
     1.130
    1.000
    0.993
    1.010
  

 


 
 protein domains:



No protein domains detected



protein domains:


  





 
 Reads annotation summary



No similarity hits to repeat databases found


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    7
    1
    0.000683
  

  

    23
    1
    0.000864
  

  

    50
    1
    0.00424
  

  

    58
    1
    0.00166
  

  

    196
    1
    0.00548
  

  

    226
    1
    0.0112
  

  

    311
    1
    0.0139