Cluster no. 179

Cluster no. 179

Go back to cluster table

Cluster is part of supercluster: 86

Cluster characteristics:

size	1233
size_real	1233
ecount	6778
supercluster	86
annotations_summary
pair_completeness	0.394796380090498
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0705596107055961
satellite_probability	3.85193604968018e-17
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	431
S4	399
S7	2
S9	2
S6	398
S2	0
S1	0
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0.0	0.0	0.0	0.0	0.0	0	0	0.0
S5	0	805.0	745.0	4.5	0.0	762.0	0	0	0.0
S4	0	745.0	683.0	6.5	0.5	747.0	0	0	1.5
S7	0	4.5	6.5	0.0	0.0	4.5	0	0	0.0
S9	0	0.0	0.5	0.0	1.0	0.5	0	0	0.0
S6	0	762.0	747.0	4.5	0.5	743.0	0	0	0.5
S2	0	0.0	0.0	0.0	0.0	0.0	0	0	0.0
S1	0	0.0	0.0	0.0	0.0	0.0	0	0	0.0
S3	0	0.0	1.5	0.0	0.0	0.5	0	0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.020	0.998	0.849	0.000	0.988	NA	NA	0.00
S4	NA	0.998	0.971	1.300	0.776	1.030	NA	NA	2.33
S7	NA	0.849	1.300	0.000	0.000	0.871	NA	NA	0.00
S9	NA	0.000	0.776	0.000	1690.000	0.750	NA	NA	0.00
S6	NA	0.988	1.030	0.871	0.750	0.988	NA	NA	0.75
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	0.000	2.330	0.000	0.000	0.750	NA	NA	0.00

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

35	34
1	29
15	16
93	3
19	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

35	85	0.0683
1	81	0.0408
15	15	0.00591
19	11	0.00557
93	11	0.0119
1320	8	0.0293
537	7	0.0247
3	4	0.0013
1100	4	0.0144
220	3	0.008
6220	3	0.0111
7720	3	0.0111
17100	3	0.0112
29	2	0.00153
48	2	0.00161
1830	2	0.00738
2520	2	0.00737
4180	2	0.00741
5370	2	0.00739
5870	2	0.00743
14200	2	0.00743
14300	2	0.00743
28100	2	0.00745
33600	2	0.00745
36800	2	0.00745
51800	2	0.00745
6	1	0.000344
37	1	0.00099
61	1	0.000905
67	1	0.00089
76	1	0.00124
86	1	0.0013
87	1	0.00112
90	1	0.00107
115	1	0.00104
141	1	0.00225
278	1	0.00314
2160	1	0.00369
2600	1	0.00368
3550	1	0.00368
3560	1	0.0037
4250	1	0.0037
4380	1	0.0037
4680	1	0.00372
5180	1	0.0037
13800	1	0.00373
13800	1	0.00373
15000	1	0.00372
15700	1	0.00372
18500	1	0.00372
22200	1	0.00372
24900	1	0.00372
25200	1	0.00372
29100	1	0.00372
29700	1	0.00372
30700	1	0.00372
33000	1	0.00372
33600	1	0.00372
34500	1	0.00372
39400	1	0.00372
42100	1	0.00372
46000	1	0.00372
49900	1	0.00372
52500	1	0.00372
61200	1	0.00372
61700	1	0.00372
67000	1	0.00372
70000	1	0.00372

CL179 ----> CL35

No. of shared pairs: :85

CL179 ----> CL1

No. of shared pairs: :81

CL179 ----> CL15

No. of shared pairs: :15

CL179 ----> CL19

No. of shared pairs: :11

CL179 ----> CL93

No. of shared pairs: :11