Cluster no. 176

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Cluster is part of supercluster: 83

Cluster characteristics:

size 1259
size_real 1259
ecount 9879
supercluster 83
annotations_summary 98.01% organelle/plastid
0.24% organelle/mitochondria
pair_completeness 0.919207317073171
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00079428117553614
satellite_probability 1.97433114407246e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 113
S5 235
S4 289
S7 91
S9 59
S6 226
S2 70
S1 80
S3 96
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 81.0 155 182.0 65.5 44.0 130.0 55.0 63.0 60.5
S5 155.0 406 480.0 126.0 76.0 382.0 110.0 111.0 108.0
S4 182.0 480 584.0 150.0 97.5 468.0 99.0 130.0 172.0
S7 65.5 126 150.0 60.0 30.5 132.0 40.5 41.5 50.5
S9 44.0 76 97.5 30.5 22.0 74.5 24.5 29.0 34.0
S6 130.0 382 468.0 132.0 74.5 330.0 78.5 89.0 112.0
S2 55.0 110 99.0 40.5 24.5 78.5 30.0 38.0 36.5
S1 63.0 111 130.0 41.5 29.0 89.0 38.0 40.0 49.5
S3 60.5 108 172.0 50.5 34.0 112.0 36.5 49.5 78.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.150 0.938 0.909 1.110 1.200 0.856 1.270 1.260 1.020
S5 0.938 1.050 1.030 0.918 0.889 1.080 1.090 0.950 0.776
S4 0.909 1.030 1.030 0.901 0.944 1.090 0.809 0.917 1.030
S7 1.110 0.918 0.901 1.220 1.000 1.040 1.120 0.997 1.020
S9 1.200 0.889 0.944 1.000 1.160 0.948 1.090 1.120 1.110
S6 0.856 1.080 1.090 1.040 0.948 1.010 0.843 0.829 0.879
S2 1.270 1.090 0.809 1.120 1.090 0.843 1.130 1.240 1.010
S1 1.260 0.950 0.917 0.997 1.120 0.829 1.240 1.130 1.180
S3 1.020 0.776 1.030 1.020 1.110 0.879 1.010 1.180 1.570

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 3 0.0024
plastid plastid 1234 0.9801

clusters with similarity:

Cluster Number of similarity hits
245 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
212 10 0.238
245 10 0.227
6970 4 0.138
8740 4 0.14
134 1 0.012
140 1 0.00213
182 1 0.00503
201 1 0.02
234 1 0.0247
60100 1 0.0364

CL176 ----> CL212

image

No. of shared pairs: :10

CL176 ----> CL245

image

No. of shared pairs: :10