Cluster no. 175

Cluster no. 175

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Cluster is part of supercluster: 82

Cluster characteristics:

size	1277
size_real	1277
ecount	4883
supercluster	82
annotations_summary	8.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG 1.25% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG 0.08% Class_I/LTR/Ty1_copia/Angela:Ty1-PROT 0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
pair_completeness	0.529341317365269
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00861393891934221
satellite_probability	6.30293069200862e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	1
S4	0
S7	0
S9	2
S6	4
S2	397
S1	436
S3	437

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0	0	0	0.0	0.0	0	0
S5	0	0	0	0	0	0.0	0.0	2	0
S4	0	0	0	0	0	0.0	0.0	0	0
S7	0	0	0	0	0	0.0	0.0	0	0
S9	0	0	0	0	0	0.0	4.0	4	3
S6	0	0	0	0	0	0.0	4.5	6	9
S2	0	0	0	0	4	4.5	374.0	494	528
S1	0	2	0	0	4	6.0	494.0	574	596
S3	0	0	0	0	3	9.0	528.0	596	633

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	0.00	NA	NA	0.000	0.000	0.000	2.910	0.000
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	0.00	NA	NA	0.000	0.000	1.260	1.060	0.753
S6	NA	0.00	NA	NA	0.000	0.000	0.802	0.896	1.270
S2	NA	0.00	NA	NA	1.260	0.802	0.924	1.030	1.040
S1	NA	2.91	NA	NA	1.060	0.896	1.030	0.998	0.981
S3	NA	0.00	NA	NA	0.753	1.270	1.040	0.981	0.988

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Angela Ty1-PROT Angela Ty1-PROT 1 0.00078

Athila Ty3-GAG Athila Ty3-GAG 1 0.00078

TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 0.00078

TatV Ty3-GAG TatV Ty3-GAG 104 0.08144

TatV Ty3-RT TatV Ty3-RT 16 0.01253

clusters with similarity:

Cluster	Number of similarity hits

108

3

clusters connected through mates:

Cluster	Number of shared read pairs	k

108	30	0.0495
50	11	0.0271
509	8	0.0376
85	4	0.00569
226	3	0.0116
4870	3	0.015
4970	3	0.015
5040	3	0.015
17000	3	0.0152
113	2	0.00346
127	2	0.0059
129	2	0.00465
989	2	0.00988
1210	2	0.00988
2800	2	0.01
3540	2	0.01
7460	2	0.0101
7980	2	0.0101
11400	2	0.0101
12400	2	0.0101
14000	2	0.0101
14600	2	0.0101
18100	2	0.0101
19800	2	0.0101
19900	2	0.0101
31100	2	0.0101
41700	2	0.0101
42400	2	0.0101
48700	2	0.0101
51600	2	0.0101
53000	2	0.0101
68700	2	0.0101
23	1	0.000753
27	1	0.000937
38	1	0.000817
42	1	0.00129
64	1	0.000979
96	1	0.00134
98	1	0.00164
116	1	0.00186
131	1	0.00186
177	1	0.00321
249	1	0.00436
335	1	0.00478
539	1	0.00475
668	1	0.00489
3620	1	0.00505
4060	1	0.00503
4250	1	0.00508
5360	1	0.00504
5480	1	0.00506
5750	1	0.00503
6240	1	0.00505
6840	1	0.00503
7100	1	0.00505
7380	1	0.00505
7410	1	0.00504
8180	1	0.00506
8230	1	0.00504
8270	1	0.00506
10400	1	0.00506
11900	1	0.00505
12900	1	0.00505
13200	1	0.00505
13500	1	0.00505
13500	1	0.00508
13900	1	0.00505
14100	1	0.00505
14100	1	0.00505
15100	1	0.00505
15100	1	0.00505
15600	1	0.00505
16300	1	0.00505
17400	1	0.00505
17700	1	0.00505
18100	1	0.00505
18600	1	0.00505
18800	1	0.00505
20800	1	0.00506
21200	1	0.00506
22700	1	0.00506
24100	1	0.00506
24700	1	0.00506
25700	1	0.00506
27100	1	0.00506
34200	1	0.00506
36900	1	0.00506
41300	1	0.00506
42900	1	0.00506
49400	1	0.00506
50300	1	0.00506
51000	1	0.00506
54900	1	0.00506
54900	1	0.00506
55500	1	0.00506
57600	1	0.00506
61800	1	0.00506
62400	1	0.00506
67500	1	0.00506

CL175 ----> CL108

No. of shared pairs: :30

CL175 ----> CL50

No. of shared pairs: :11