Cluster no. 174

Cluster no. 174

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Cluster is part of supercluster: 81

Cluster characteristics:

size	1295
size_real	1295
ecount	6954
supercluster	81
annotations_summary	0.08% Class_I/LINE:LINE-ENDO 0.08% organelle/plastid 0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-INT
pair_completeness	0.530732860520094
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000772200772200772
satellite_probability	1.86264069827155e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1
S5	0
S4	0
S7	1
S9	3
S6	3
S2	420
S1	426
S3	441

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0	0	0.5	1.0	0.0	0	1	0.5
S5	0.0	0	0	0.0	0.0	0.0	0	0	0.0
S4	0.0	0	0	0.0	0.0	0.0	0	0	0.0
S7	0.5	0	0	0.0	0.0	0.0	0	0	0.0
S9	1.0	0	0	0.0	0.0	0.0	1	0	1.5
S6	0.0	0	0	0.0	0.0	0.0	5	6	6.5
S2	0.0	0	0	0.0	1.0	5.0	687	696	772.0
S1	1.0	0	0	0.0	0.0	6.0	696	757	822.0
S3	0.5	0	0	0.0	1.5	6.5	772	822	885.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	NA	NA	2320	662.000	0.000	0.000	1.020	0.466
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	2320.000	NA	NA	0	0.000	0.000	0.000	0.000	0.000
S9	662.000	NA	NA	0	0.000	0.000	0.919	0.000	1.200
S6	0.000	NA	NA	0	0.000	0.000	0.919	1.050	1.040
S2	0.000	NA	NA	0	0.919	0.919	1.020	0.981	0.999
S1	1.020	NA	NA	0	0.000	1.050	0.981	1.010	1.010
S3	0.466	NA	NA	0	1.200	1.040	0.999	1.010	0.995

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00077

LINE LINE-ENDO LINE LINE-ENDO 1 0.00077

Chlamyvir Ty3-INT Chlamyvir Ty3-INT 1 0.00077

clusters with similarity:

Cluster	Number of similarity hits

58	23
27	5
162	2
57	1
91	1
110	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

58	43	0.0556
225	18	0.0603
110	13	0.0156
653	7	0.0335
1920	5	0.0244
7	4	0.00244
10100	4	0.02
46	3	0.0027
1330	3	0.0147
96	2	0.00268
189	2	0.00609
1830	2	0.00985
2520	2	0.00993
32000	2	0.01
23	1	0.000752
57	1	0.001
64	1	0.000977
108	1	0.00164
116	1	0.00185
124	1	0.00238
125	1	0.00146
129	1	0.00231
143	1	0.00162
196	1	0.00282
210	1	0.00246
222	1	0.00341
229	1	0.00305
269	1	0.0041
273	1	0.00412
301	1	0.00368
311	1	0.0041
1250	1	0.00493
2010	1	0.00491
2060	1	0.00489
3060	1	0.00496
4020	1	0.00498
5200	1	0.00501
8360	1	0.00499
8400	1	0.00499
13300	1	0.005
14000	1	0.005
18800	1	0.005
19300	1	0.00503
36700	1	0.00501
41500	1	0.00501
42000	1	0.00501
43700	1	0.00501
52300	1	0.00501

CL174 ----> CL58

No. of shared pairs: :43

CL174 ----> CL225

No. of shared pairs: :18

CL174 ----> CL110

No. of shared pairs: :13