Cluster no. 173

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Cluster is part of supercluster: 66

Cluster characteristics:

size 1295
size_real 1295
ecount 17413
supercluster 66
annotations_summary 0.46% organelle/mitochondria
0.08% organelle/plastid
pair_completeness 0.518171160609613
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0362934362934363
satellite_probability 5.17120813700996e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 450
S5 5
S4 3
S7 381
S9 442
S6 5
S2 2
S1 4
S3 3
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1910.0 15.5 4.0 1680.0 2120.0 19.5 5 10.5 15.5
S5 15.5 0.0 0.0 9.5 18.5 0.5 0 0.0 0.0
S4 4.0 0.0 0.0 4.0 4.5 0.0 0 0.0 0.0
S7 1680.0 9.5 4.0 1460.0 1840.0 18.0 6 6.5 13.5
S9 2120.0 18.5 4.5 1840.0 2340.0 24.5 8 9.0 14.5
S6 19.5 0.5 0.0 18.0 24.5 0.0 0 0.0 0.0
S2 5.0 0.0 0.0 6.0 8.0 0.0 0 0.0 0.0
S1 10.5 0.0 0.0 6.5 9.0 0.0 0 1.0 0.0
S3 15.5 0.0 0.0 13.5 14.5 0.0 0 0.0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.993 1.060 0.964 1.010 1.000 0.939 0.792 1.170 1.07
S5 1.060 0.000 0.000 0.746 1.150 3.170 0.000 0.000 0.00
S4 0.964 0.000 0.000 1.110 0.982 0.000 0.000 0.000 0.00
S7 1.010 0.746 1.110 0.998 0.998 0.995 1.090 0.832 1.07
S9 1.000 1.150 0.982 0.998 0.999 1.070 1.150 0.910 0.91
S6 0.939 3.170 0.000 0.995 1.070 0.000 0.000 0.000 0.00
S2 0.792 0.000 0.000 1.090 1.150 0.000 0.000 0.000 0.00
S1 1.170 0.000 0.000 0.832 0.910 0.000 0.000 23.900 0.00
S3 1.070 0.000 0.000 1.070 0.910 0.000 0.000 0.000 0.00

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 6 0.00463
plastid plastid 1 0.00077

clusters with similarity:

Cluster Number of similarity hits
64 25
22 14
198 8
140 6
68 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
198 61 0.157
22 48 0.0262
140 17 0.0262
11 4 0.00277
14100 3 0.0145
16900 3 0.0145
17300 3 0.0145
4 2 0.00111
4990 2 0.00964
5300 2 0.00964
9980 2 0.00964
11900 2 0.00966
14700 2 0.00966
16900 2 0.00966
17500 2 0.00966
23200 2 0.00969
28000 2 0.00969
31800 2 0.00969
52800 2 0.00969
5 1 0.000484
8 1 0.000495
12 1 0.000716
17 1 0.000549
36 1 0.000872
53 1 0.00131
91 1 0.00116
160 1 0.00411
166 1 0.00267
167 1 0.00242
5510 1 0.00481
5740 1 0.00481
7300 1 0.00481
9850 1 0.00482
11000 1 0.00484
13500 1 0.00483
13900 1 0.00485
15100 1 0.00483
15900 1 0.00483
16400 1 0.00483
17100 1 0.00483
17400 1 0.00485
22800 1 0.00484
26600 1 0.00484
30100 1 0.00484
34200 1 0.00484
42400 1 0.00484
43000 1 0.00484
43900 1 0.00484
47500 1 0.00484
54200 1 0.00484
54200 1 0.00484
54800 1 0.00484
55100 1 0.00484
58300 1 0.00484
65200 1 0.00484
65300 1 0.00484
66800 1 0.00484
69600 1 0.00484

CL173 ----> CL198

image

No. of shared pairs: :61

CL173 ----> CL22

image

No. of shared pairs: :48

CL173 ----> CL140

image

No. of shared pairs: :17