Cluster no. 172

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Cluster is part of supercluster: 80

Cluster characteristics:

size 1300
size_real 1300
ecount 44764
supercluster 80
annotations_summary
pair_completeness 0.825842696629214
pbs_score 0.08226230000000001
TR_score 0.77969951923077
TR_monomer_length 189.0
loop_index 0.820769230769231
satellite_probability 0.0600149447073601
consensus 
ATCGACAAATATGAAAGATGATGAATCATTTGGATTGGGTGCTGCAAAAACCAACCCTTCACAGTAGTTAAAAAATAGGG
GTAATTGTTGGAAGTAAGGGCTATTTAGAGAATTAGGGGTAGGATTAAAAAGAAGGGTTGTTTTGAAGTATTAAGAGAAG
TAGGGGTAGTTTAAGCATAGTAGGGGTAG

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
    408
  

  

    S5
      2
  

  

    S4
      2
  

  

    S7
    413
  

  

    S9
    472
  

  

    S6
      2
  

  

    S2
      1
  

  

    S1
      0
  

  

    S3
      0
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S5
    S4
    S7
    S9
    S6
    S2
    S1
    S3
  

   

    S8
    4740.0
    17
     87.0
    4130.0
    5520.0
    14.5
    41.5
    0
    0
  

  

    S5
      17.0
     0
      0.0
      11.0
      15.0
     0.0
     0.0
    0
    0
  

  

    S4
      87.0
     0
      0.0
      74.5
     102.0
     0.0
     0.5
    0
    0
  

  

    S7
    4130.0
    11
     74.5
    3560.0
    4830.0
    14.0
    35.5
    0
    0
  

  

    S9
    5520.0
    15
    102.0
    4830.0
    6550.0
    16.5
    50.5
    0
    0
  

  

    S6
      14.5
     0
      0.0
      14.0
      16.5
     0.0
     0.0
    0
    0
  

  

    S2
      41.5
     0
      0.5
      35.5
      50.5
     0.0
     0.0
    0
    0
  

  

    S1
       0.0
     0
      0.0
       0.0
       0.0
     0.0
     0.0
    0
    0
  

  

    S3
       0.0
     0
      0.0
       0.0
       0.0
     0.0
     0.0
    0
    0
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S5
    S4
    S7
    S9
    S6
    S2
    S1
    S3
  

   

    S8
    1.000
    1.220
    1.010
    1.000
    0.994
    0.992
    0.998
    NA
    NA
  

  

    S5
    1.220
    0.000
    0.000
    0.905
    0.914
    0.000
    0.000
    NA
    NA
  

  

    S4
    1.010
    0.000
    0.000
    0.996
    1.020
    0.000
    0.661
    NA
    NA
  

  

    S7
    1.000
    0.905
    0.996
    0.994
    1.000
    1.100
    0.981
    NA
    NA
  

  

    S9
    0.994
    0.914
    1.020
    1.000
    1.000
    0.961
    1.030
    NA
    NA
  

  

    S6
    0.992
    0.000
    0.000
    1.100
    0.961
    0.000
    0.000
    NA
    NA
  

  

    S2
    0.998
    0.000
    0.661
    0.981
    1.030
    0.000
    0.000
    NA
    NA
  

  

    S1
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
  

  

    S3
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
    NA
  

 


 
 protein domains:



No protein domains detected



protein domains:


  





 
 Reads annotation summary



No similarity hits to repeat databases found


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    4
    4
    0.00241
  

  

    265
    4
    0.0324
  

  

    9
    3
    0.00395
  

  

    53
    2
    0.00323
  

  

    40000
    2
    0.0317
  

  

    60900
    2
    0.0317
  

  

    8
    1
    0.000533
  

  

    11
    1
    0.000767
  

  

    12
    1
    0.000798
  

  

    17
    1
    0.000596
  

  

    36
    1
    0.000997
  

  

    54
    1
    0.00111
  

  

    69
    1
    0.000844
  

  

    75
    1
    0.0015
  

  

    100
    1
    0.00204
  

  

    106
    1
    0.00215
  

  

    253
    1
    0.00816
  

  

    492
    1
    0.0132
  

  

    839
    1
    0.0146
  

  

    7420
    1
    0.0156
  

  

    8420
    1
    0.0156