Cluster no. 171

Go back to cluster table

Cluster is part of supercluster: 79

Cluster characteristics:

size 1338
size_real 1338
ecount 12354
supercluster 79
annotations_summary 0.07% organelle/plastid
pair_completeness 0.383660806618407
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000747384155455904
satellite_probability 7.55887620545779e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 2
S4 0
S7 2
S9 2
S6 1
S2 429
S1 439
S3 463
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0 0.0 0.0 0.0 0.0 0.0 0.0
S5 0 0.0 0 0.0 0.0 0.0 9.0 10.5 8.0
S4 0 0.0 0 0.0 0.0 0.0 0.0 0.0 0.0
S7 0 0.0 0 0.0 0.0 0.0 6.0 9.0 8.5
S9 0 0.0 0 0.0 0.0 0.0 1.5 0.5 0.0
S6 0 0.0 0 0.0 0.0 0.0 0.0 1.5 1.5
S2 0 9.0 0 6.0 1.5 0.0 1260.0 1370.0 1290.0
S1 0 10.5 0 9.0 0.5 1.5 1370.0 1480.0 1410.0
S3 0 8.0 0 8.5 0.0 1.5 1290.0 1410.0 1370.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.00 NA 0.000 0.000 0.00 1.030 1.100 0.880
S4 NA NA NA NA NA NA NA NA NA
S7 NA 0.00 NA 0.000 0.000 0.00 0.801 1.110 1.090
S9 NA 0.00 NA 0.000 0.000 0.00 2.350 0.722 0.000
S6 NA 0.00 NA 0.000 0.000 0.00 0.000 1.440 1.510
S2 NA 1.03 NA 0.801 2.350 0.00 1.000 1.010 0.991
S1 NA 1.10 NA 1.110 0.722 1.44 1.010 0.998 0.994
S3 NA 0.88 NA 1.090 0.000 1.51 0.991 0.994 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00075

clusters with similarity:

Cluster Number of similarity hits
23 1
148 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
30 17 0.013
148 17 0.0254
419 8 0.0258
344 6 0.0189
797 5 0.0165
341 4 0.0128
4390 4 0.0133
431 3 0.00972
516 3 0.00951
637 3 0.0098
838 3 0.00985
960 3 0.00969
1870 3 0.00997
2360 3 0.00997
5760 3 0.00998
6860 3 0.00998
9460 3 0.01
10900 3 0.01
7 2 0.00115
23 2 0.0014
42 2 0.00227
113 2 0.00294
1600 2 0.00658
2590 2 0.00662
2910 2 0.00663
3170 2 0.00667
3510 2 0.00664
3740 2 0.00663
5640 2 0.00666
6230 2 0.00668
6290 2 0.00668
6300 2 0.00668
6440 2 0.00668
7490 2 0.00667
8110 2 0.00667
8770 2 0.00667
9440 2 0.00667
12700 2 0.00668
13100 2 0.00668
14700 2 0.00668
15400 2 0.00668
16400 2 0.00668
31000 2 0.00669
35600 2 0.00669
38400 2 0.00669
38400 2 0.00669
45000 2 0.00669
52900 2 0.00669
53300 2 0.00669
59800 2 0.00669
61300 2 0.00669
70500 2 0.00669
58 1 0.00115
74 1 0.0016
210 1 0.00197
229 1 0.00234
542 1 0.00324
623 1 0.00322
1460 1 0.00329
1710 1 0.00331
2270 1 0.00332
2290 1 0.00333
2330 1 0.0033
2360 1 0.00332
2730 1 0.00331
2860 1 0.00332
3230 1 0.00331
3910 1 0.00332
4300 1 0.00333
4300 1 0.00335
4500 1 0.00333
4580 1 0.00332
4580 1 0.00332
4810 1 0.00332
6600 1 0.00333
6680 1 0.00333
7240 1 0.00334
7920 1 0.00333
8150 1 0.00333
8710 1 0.00334
9120 1 0.00333
10400 1 0.00333
10900 1 0.00333
11000 1 0.00333
11200 1 0.00334
11400 1 0.00335
12100 1 0.00334
13300 1 0.00335
13800 1 0.00334
14100 1 0.00334
14700 1 0.00334
14700 1 0.00334
16600 1 0.00334
17500 1 0.00335
17500 1 0.00335
18700 1 0.00334
19200 1 0.00334
19600 1 0.00334
19700 1 0.00335
23300 1 0.00334
25100 1 0.00334
25700 1 0.00334
26000 1 0.00334
26600 1 0.00334
27500 1 0.00334
28600 1 0.00334
28900 1 0.00334
31000 1 0.00334
31200 1 0.00334
33200 1 0.00334
35300 1 0.00334
36000 1 0.00334
37100 1 0.00334
38800 1 0.00334
39400 1 0.00334
41200 1 0.00334
41500 1 0.00334
44000 1 0.00334
46100 1 0.00334
46700 1 0.00334
47300 1 0.00334
47700 1 0.00334
48100 1 0.00334
49500 1 0.00334
49600 1 0.00334
54900 1 0.00334
55600 1 0.00334
57300 1 0.00334
58100 1 0.00334
61900 1 0.00334
63700 1 0.00334
64000 1 0.00334
65600 1 0.00334
67700 1 0.00334

CL171 ----> CL30

image

No. of shared pairs: :17

CL171 ----> CL148

image

No. of shared pairs: :17