Cluster no. 170

Cluster no. 170

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Cluster is part of supercluster: 78

Cluster characteristics:

size	1354
size_real	1354
ecount	9982
supercluster	78
annotations_summary
pair_completeness	0.627403846153846
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0155096011816839
satellite_probability	3.63316006278968e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	4
S4	1
S7	4
S9	0
S6	4
S2	384
S1	459
S3	498

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0.0	0.0	0.0	0	0.0	0	0.0	0.0
S5	0	0.0	0.0	0.5	0	0.0	8	11.5	7.5
S4	0	0.0	0.0	0.0	0	0.0	1	0.0	0.5
S7	0	0.5	0.0	0.0	0	0.0	7	7.0	8.0
S9	0	0.0	0.0	0.0	0	0.0	0	0.0	0.0
S6	0	0.0	0.0	0.0	0	0.0	2	5.0	2.5
S2	0	8.0	1.0	7.0	0	2.0	672	903.0	1050.0
S1	0	11.5	0.0	7.0	0	5.0	903	1130.0	1290.0
S3	0	7.5	0.5	8.0	0	2.5	1050	1290.0	1570.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	0.000	0.000	8.070	NA	0.000	1.100	1.250	0.692
S4	NA	0.000	0.000	0.000	NA	0.000	2.520	0.000	0.846
S7	NA	8.070	0.000	0.000	NA	0.000	1.170	0.928	0.903
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	0.000	0.000	0.000	NA	0.000	0.795	1.570	0.668
S2	NA	1.100	2.520	1.170	NA	0.795	0.960	1.020	1.010
S1	NA	1.250	0.000	0.928	NA	1.570	1.020	1.000	0.981
S3	NA	0.692	0.846	0.903	NA	0.668	1.010	0.981	1.010

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

7	40
30	16
125	8
96	2
116	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

7	35	0.022
96	35	0.0499
125	27	0.0421
30	21	0.018
3420	7	0.044
7380	3	0.019
14900	3	0.0192
16200	3	0.0192
17500	3	0.0192
20000	3	0.0192
23	2	0.00156
42	2	0.00272
6560	2	0.0127
7310	2	0.0127
13400	2	0.0128
14200	2	0.0128
18900	2	0.0128
37600	2	0.0128
48800	2	0.0128
77	1	0.00254
85	1	0.00151
113	1	0.00186
129	1	0.00257
143	1	0.00175
148	1	0.0019
606	1	0.00617
2380	1	0.00629
3740	1	0.00631
4130	1	0.00631
5530	1	0.00635
8010	1	0.00637
10200	1	0.00641
13800	1	0.00639
18300	1	0.00639
19600	1	0.00643
20600	1	0.00641
28800	1	0.00641
34200	1	0.00641
36500	1	0.00641
49300	1	0.00641
54800	1	0.00641
59400	1	0.00641

CL170 ----> CL7

No. of shared pairs: :35

CL170 ----> CL96

No. of shared pairs: :35

CL170 ----> CL125

No. of shared pairs: :27

CL170 ----> CL30

No. of shared pairs: :21