Cluster no. 169

Cluster no. 169

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Cluster is part of supercluster: 1

Cluster characteristics:

size	1475
size_real	1475
ecount	17411
supercluster	1
annotations_summary
pair_completeness	0.6280353200883
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000677966101694915
satellite_probability	4.97759293480724e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	443
S4	503
S7	0
S9	2
S6	525
S2	2
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0.0	0.0	0	0.0	0.0	0.0	0	0
S5	0	1620.0	1770.0	0	11.0	1930.0	2.5	0	0
S4	0	1770.0	2030.0	0	10.5	2010.0	6.5	0	0
S7	0	0.0	0.0	0	0.0	0.0	0.0	0	0
S9	0	11.0	10.5	0	0.0	11.5	0.5	0	0
S6	0	1930.0	2010.0	0	11.5	2250.0	5.5	0	0
S2	0	2.5	6.5	0	0.5	5.5	0.0	0	0
S1	0	0.0	0.0	0	0.0	0.0	0.0	0	0
S3	0	0.0	0.0	0	0.0	0.0	0.0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	0.994	0.993	NA	1.070	1.010	0.544	NA	NA
S4	NA	0.993	1.040	NA	0.937	0.967	1.300	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	1.070	0.937	NA	0.000	0.963	17.300	NA	NA
S6	NA	1.010	0.967	NA	0.963	1.020	1.030	NA	NA
S2	NA	0.544	1.300	NA	17.300	1.030	0.000	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

3	108
101	93
29	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

101	130	0.201
3	93	0.0311
48	16	0.014
29	10	0.00829
16500	3	0.0176
18700	2	0.0118
66900	2	0.0118
2	1	0.000583
61	1	0.000994
63	1	0.0018
87	1	0.00127
90	1	0.00119
14000	1	0.00588
31800	1	0.0059
44100	1	0.0059
46000	1	0.0059

CL169 ----> CL101

No. of shared pairs: :130

CL169 ----> CL3

No. of shared pairs: :93

CL169 ----> CL48

No. of shared pairs: :16

CL169 ----> CL29

No. of shared pairs: :10