Cluster no. 167

Cluster no. 167

Go back to cluster table

Cluster is part of supercluster: 3

Cluster characteristics:

size	1542
size_real	1542
ecount	26300
supercluster	3
annotations_summary
pair_completeness	0.575076608784474
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0512321660181582
satellite_probability	9.58737194902481e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	562
S5	6
S4	0
S7	484
S9	480
S6	4
S2	4
S1	2
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	3710.0	23.5	0	3120.0	2950.0	38.5	20.0	5.5	0
S5	23.5	2.0	0	13.5	20.0	0.0	0.0	0.0	0
S4	0.0	0.0	0	0.0	0.0	0.0	0.0	0.0	0
S7	3120.0	13.5	0	2590.0	2480.0	35.5	16.5	2.0	0
S9	2950.0	20.0	0	2480.0	2410.0	40.5	14.5	2.5	0
S6	38.5	0.0	0	35.5	40.5	1.0	0.0	0.0	0
S2	20.0	0.0	0	16.5	14.5	0.0	0.0	0.0	0
S1	5.5	0.0	0	2.0	2.5	0.0	0.0	0.0	0
S3	0.0	0.0	0	0.0	0.0	0.0	0.0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	1.060	NA	1.010	0.993	0.887	1.040	1.460	NA
S5	1.060	15.100	NA	0.728	1.130	0.000	0.000	0.000	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	1.010	0.728	NA	0.998	0.997	0.978	1.030	0.636	NA
S9	0.993	1.130	NA	0.997	1.010	1.160	0.944	0.830	NA
S6	0.887	0.000	NA	0.978	1.160	1.970	0.000	0.000	NA
S2	1.040	0.000	NA	1.030	0.944	0.000	0.000	0.000	NA
S1	1.460	0.000	NA	0.636	0.830	0.000	0.000	0.000	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

9	442
4	286
40	48

clusters connected through mates:

Cluster	Number of shared read pairs	k

9	216	0.239
4	144	0.0798
40	15	0.0192
1750	3	0.0143
19000	3	0.0143
53	2	0.00262
203	2	0.0054
3440	2	0.00943
30900	2	0.00957
8	1	0.000494
22	1	0.000545
59	1	0.000724
163	1	0.00363
173	1	0.00242
3950	1	0.0048
48000	1	0.00478
50500	1	0.00478

CL167 ----> CL9

No. of shared pairs: :216

CL167 ----> CL4

No. of shared pairs: :144

CL167 ----> CL40

No. of shared pairs: :15