Cluster no. 166

Cluster no. 166

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Cluster is part of supercluster: 3

Cluster characteristics:

size	1553
size_real	1553
ecount	23447
supercluster	3
annotations_summary
pair_completeness	0.641649048625793
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0154539600772698
satellite_probability	3.2248535574017e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	509
S5	1
S4	2
S7	512
S9	524
S6	2
S2	3
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	2240.0	2.0	12.5	2530.0	2450.0	12.0	14.5	0	0
S5	2.0	0.0	0.0	2.5	3.5	0.0	0.5	0	0
S4	12.5	0.0	0.0	18.0	8.0	0.5	0.0	0	0
S7	2530.0	2.5	18.0	2860.0	2690.0	16.5	13.5	0	0
S9	2450.0	3.5	8.0	2690.0	2730.0	16.5	17.0	0	0
S6	12.0	0.0	0.5	16.5	16.5	0.0	0.0	0	0
S2	14.5	0.5	0.0	13.5	17.0	0.0	0.0	0	0
S1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0	0
S3	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.994	0.759	1.030	1.010	1.000	0.851	1.030	NA	NA
S5	0.759	0.000	0.000	0.848	1.220	0.000	30.300	NA	NA
S4	1.030	0.000	0.000	1.330	0.608	6.610	0.000	NA	NA
S7	1.010	0.848	1.330	1.010	0.980	1.050	0.856	NA	NA
S9	1.000	1.220	0.608	0.980	1.020	1.070	1.110	NA	NA
S6	0.851	0.000	6.610	1.050	1.070	0.000	0.000	NA	NA
S2	1.030	30.300	0.000	0.856	1.110	0.000	0.000	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

4	148
12	143
103	16
40	7
114	7

clusters connected through mates:

Cluster	Number of shared read pairs	k

12	156	0.115
4	108	0.0611
103	24	0.0569
40	6	0.00809
114	5	0.00968
8	2	0.00101
11	2	0.00142
54	2	0.00199
17	1	0.00056
138	1	0.00268
139	1	0.00232
173	1	0.00267
497	1	0.00546
58600	1	0.00587

CL166 ----> CL12

No. of shared pairs: :156

CL166 ----> CL4

No. of shared pairs: :108

CL166 ----> CL103

No. of shared pairs: :24