Cluster no. 164

Cluster no. 164

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Cluster is part of supercluster: 75

Cluster characteristics:

size	1641
size_real	1641
ecount	25352
supercluster	75
annotations_summary	99.94% organelle/plastid 0.06% organelle/mitochondria
pair_completeness	0.897109826589595
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000609384521633151
satellite_probability	3.13317635625349e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	128
S5	328
S4	298
S7	142
S9	128
S6	301
S2	96
S1	104
S3	116

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	170	382	348	174	152	343	114.0	124	142.0
S5	382	1090	958	440	379	1010	282.0	319	346.0
S4	348	958	841	394	347	879	296.0	292	319.0
S7	174	440	394	187	166	394	120.0	137	162.0
S9	152	379	347	166	134	348	112.0	122	134.0
S6	343	1010	879	394	348	886	266.0	286	306.0
S2	114	282	296	120	112	266	78.0	88	96.5
S1	124	319	292	137	122	286	88.0	92	104.0
S3	142	346	319	162	134	306	96.5	104	107.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.140	0.955	0.968	1.040	1.040	0.946	1.020	1.040	1.070
S5	0.955	1.020	0.997	0.986	0.974	1.040	0.943	0.992	0.982
S4	0.968	0.997	0.976	0.984	0.994	1.010	1.110	1.010	1.010
S7	1.040	0.986	0.984	1.000	1.020	0.972	0.960	1.020	1.100
S9	1.040	0.974	0.994	1.020	0.948	0.987	1.040	1.040	1.040
S6	0.946	1.040	1.010	0.972	0.987	1.010	0.986	0.982	0.957
S2	1.020	0.943	1.110	0.960	1.040	0.986	0.938	0.982	0.982
S1	1.040	0.992	1.010	1.020	1.040	0.982	0.982	0.953	0.982
S3	1.070	0.982	1.010	1.100	1.040	0.957	0.982	0.982	0.921

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00061

plastid plastid 1640 0.99939

clusters with similarity:

Cluster	Number of similarity hits

134	17
160	8

clusters connected through mates:

Cluster	Number of shared read pairs	k

134	18	0.178
160	16	0.194
156	2	0.0241
3	1	0.000349
29	1	0.000923
34	1	0.000819
49	1	0.000631
76	1	0.00171
109	1	0.00197
117	1	0.00242
144	1	0.00412
187	1	0.0124
191	1	0.0149
197	1	0.0133
201	1	0.0147
204	1	0.0156
516	1	0.0161
6910	1	0.0213
36400	1	0.022
70000	1	0.022

CL164 ----> CL134

No. of shared pairs: :18

CL164 ----> CL160

No. of shared pairs: :16