Cluster no. 162

Cluster no. 162

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Cluster is part of supercluster: 2

Cluster characteristics:

size	1687
size_real	1687
ecount	119121
supercluster	2
annotations_summary	0.06% Class_I/LTR/Ty1_copia/TAR:Ty1-RH 0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
pair_completeness	0.255208333333333
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.004149377593361
satellite_probability	1.39528303731336e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	535
S5	4
S4	1
S7	569
S9	567
S6	5
S2	1
S1	4
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	11900.0	102.0	14.5	12400.0	13000.0	213.0	8.0	138.0	20.0
S5	102.0	0.0	0.0	104.0	116.0	2.5	0.0	1.0	0.0
S4	14.5	0.0	0.0	12.5	11.0	0.5	0.0	0.0	0.0
S7	12400.0	104.0	12.5	12600.0	13300.0	212.0	5.0	140.0	21.5
S9	13000.0	116.0	11.0	13300.0	14100.0	222.0	12.5	151.0	22.5
S6	213.0	2.5	0.5	212.0	222.0	3.0	0.0	1.5	1.0
S2	8.0	0.0	0.0	5.0	12.5	0.0	0.0	0.5	0.0
S1	138.0	1.0	0.0	140.0	151.0	1.5	0.5	1.0	0.0
S3	20.0	0.0	0.0	21.5	22.5	1.0	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.994	0.988	1.190	1.010	1.000	1.020	0.969	1.010	0.969
S5	0.988	0.000	0.000	0.984	1.030	1.390	0.000	0.842	0.000
S4	1.190	0.000	0.000	0.998	0.830	2.360	0.000	0.000	0.000
S7	1.010	0.984	0.998	0.997	0.999	0.992	0.591	0.993	1.020
S9	1.000	1.030	0.830	0.999	1.000	0.986	1.400	1.010	1.010
S6	1.020	1.390	2.360	0.992	0.986	0.832	0.000	0.629	2.800
S2	0.969	0.000	0.000	0.591	1.400	0.000	0.000	5.280	0.000
S1	1.010	0.842	0.000	0.993	1.010	0.629	5.280	0.634	0.000
S3	0.969	0.000	0.000	1.020	1.010	2.800	0.000	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TAR Ty1-RH TAR Ty1-RH 1 0.00059

TatV Ty3-INT TatV Ty3-INT 1 0.00059

clusters with similarity:

Cluster	Number of similarity hits

8	1590
22	723
91	74
174	2
78	1
143	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

8	419	0.181
22	412	0.194
91	20	0.0173
69	5	0.00308
18	4	0.00228
5	3	0.00127
51	3	0.00176
65	3	0.00331
78	3	0.00189
4	2	0.000953
11	2	0.00115
12	2	0.00118
17	2	0.000945
106	2	0.00221
34600	2	0.00399
9	1	0.000835
36	1	0.000694
40	1	0.000932
53	1	0.000946
59	1	0.000597
68	1	0.000775
136	1	0.000874
261	1	0.00182
949	1	0.00197
1490	1	0.00198
5410	1	0.00199
15400	1	0.00199
25900	1	0.00199
43800	1	0.00199
46200	1	0.00199
66600	1	0.00199

CL162 ----> CL8

No. of shared pairs: :419

CL162 ----> CL22

No. of shared pairs: :412

CL162 ----> CL91

No. of shared pairs: :20