Cluster no. 160

Cluster no. 160

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Cluster is part of supercluster: 73

Cluster characteristics:

size	1726
size_real	1726
ecount	21443
supercluster	73
annotations_summary	99.54% organelle/plastid 0.12% organelle/mitochondria
pair_completeness	0.915649278579356
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000579374275782155
satellite_probability	1.97433114407246e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	155
S5	355
S4	304
S7	122
S9	103
S6	338
S2	113
S1	112
S3	124

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	199	404	310	139.0	140.0	368	126.0	106	142.0
S5	404	996	795	312.0	273.0	881	276.0	249	337.0
S4	310	795	681	260.0	222.0	734	217.0	218	260.0
S7	139	312	260	113.0	92.5	300	103.0	106	106.0
S9	140	273	222	92.5	80.0	262	95.5	71	98.0
S6	368	881	734	300.0	262.0	895	243.0	242	319.0
S2	126	276	217	103.0	95.5	243	96.0	102	87.5
S1	106	249	218	106.0	71.0	242	102.0	93	93.0
S3	142	337	260	106.0	98.0	319	87.5	93	114.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.140	0.990	0.930	1.010	1.160	0.960	1.040	0.923	1.010
S5	0.990	1.040	1.020	0.966	0.970	0.984	0.973	0.923	1.030
S4	0.930	1.020	1.070	0.986	0.964	1.000	0.935	0.989	0.967
S7	1.010	0.966	0.986	1.030	0.972	0.989	1.070	1.160	0.954
S9	1.160	0.970	0.964	0.972	0.965	0.995	1.140	0.892	1.010
S6	0.960	0.984	1.000	0.989	0.995	1.070	0.912	0.954	1.040
S2	1.040	0.973	0.935	1.070	1.140	0.912	1.130	1.270	0.895
S1	0.923	0.923	0.989	1.160	0.892	0.954	1.270	1.220	1.000
S3	1.010	1.030	0.967	0.954	1.010	1.040	0.895	1.000	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 2 0.0012

plastid plastid 1718 0.9954

clusters with similarity:

Cluster	Number of similarity hits

164	8
201	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

164	16	0.194
201	10	0.163
197	9	0.131
2	1	0.000631
26	1	0.00104
36	1	0.00102
71	1	0.00103
82	1	0.00149
128	1	0.00152
173	1	0.00411
215	1	0.0165
8820	1	0.025
11100	1	0.0256
44000	1	0.0256
44300	1	0.0256

CL160 ----> CL164

No. of shared pairs: :16

CL160 ----> CL201

No. of shared pairs: :10