Cluster no. 158

Cluster no. 158

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Cluster is part of supercluster: 31

Cluster characteristics:

size	1818
size_real	1818
ecount	53809
supercluster	31
annotations_summary	64.36% 45S_rDNA/18S_rDNA 6.71% 45S_rDNA/5.8S_rDNA
pair_completeness	0.885892116182573
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00055005500550055
satellite_probability	3.92929639329527e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	150
S5	347
S4	308
S7	135
S9	126
S6	315
S2	168
S1	120
S3	149

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	468	584	522	474	404	516	406	273	377
S5	584	2240	2060	628	570	2080	826	540	723
S4	522	2060	1800	575	508	1910	727	493	633
S7	474	628	575	441	374	544	440	279	400
S9	404	570	508	374	340	521	362	242	310
S6	516	2080	1910	544	521	1910	729	470	621
S2	406	826	727	440	362	729	583	454	587
S1	273	540	493	279	242	470	454	330	430
S3	377	723	633	400	310	621	587	430	520

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.560	0.763	0.756	1.520	1.490	0.742	1.060	1.040	1.100
S5	0.763	1.150	1.170	0.793	0.825	1.170	0.848	0.808	0.825
S4	0.756	1.170	1.140	0.807	0.815	1.200	0.829	0.819	0.802
S7	1.520	0.793	0.807	1.370	1.330	0.759	1.110	1.030	1.130
S9	1.490	0.825	0.815	1.330	1.390	0.831	1.050	1.020	1.000
S6	0.742	1.170	1.200	0.759	0.831	1.190	0.825	0.774	0.781
S2	1.060	0.848	0.829	1.110	1.050	0.825	1.200	1.360	1.340
S1	1.040	0.808	0.819	1.030	1.020	0.774	1.360	1.440	1.430
S3	1.100	0.825	0.802	1.130	1.000	0.781	1.340	1.430	1.320

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

18S_rDNA 18S_rDNA 1170 0.644

5.8S_rDNA 5.8S_rDNA 122 0.067

clusters with similarity:

Cluster	Number of similarity hits

133	110
224	11
244	7

clusters connected through mates:

Cluster	Number of shared read pairs	k

133	57	0.444
224	14	0.193
244	10	0.124
1	1	0.000564
6	1	0.000371
10	1	0.000611
39	1	0.000987
68	1	0.00118
85	1	0.00178
97	1	0.00426
112	1	0.00257
139	1	0.00316
13400	1	0.0177
55400	1	0.0179
63400	1	0.0179

CL158 ----> CL133

No. of shared pairs: :57

CL158 ----> CL224

No. of shared pairs: :14

CL158 ----> CL244

No. of shared pairs: :10