Cluster no. 156

Cluster no. 156

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Cluster is part of supercluster: 71

Cluster characteristics:

size	1849
size_real	1849
ecount	14069
supercluster	71
annotations_summary	97.35% organelle/plastid 0.16% organelle/mitochondria
pair_completeness	0.920041536863967
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000540832882639265
satellite_probability	1.97433114407246e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	143
S5	355
S4	386
S7	135
S9	118
S6	365
S2	111
S1	110
S3	126

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	88	189	215	87.0	73.0	197	57.0	60.0	74.0
S5	189	630	620	161.0	171.0	646	158.0	138.0	155.0
S4	215	620	725	178.0	166.0	648	168.0	163.0	196.0
S7	87	161	178	68.0	60.5	164	56.0	59.5	60.0
S9	73	171	166	60.5	63.0	156	52.5	43.0	58.0
S6	197	646	648	164.0	156.0	599	164.0	146.0	170.0
S2	57	158	168	56.0	52.5	164	42.0	53.5	59.5
S1	60	138	163	59.5	43.0	146	53.5	56.0	53.5
S3	74	155	196	60.0	58.0	170	59.5	53.5	51.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.140	0.892	0.945	1.320	1.170	0.923	0.953	1.050	1.140
S5	0.892	1.080	0.988	0.884	0.995	1.100	0.955	0.877	0.867
S4	0.945	0.988	1.080	0.908	0.903	1.030	0.948	0.965	1.020
S7	1.320	0.884	0.908	1.200	1.130	0.894	1.090	1.210	1.080
S9	1.170	0.995	0.903	1.130	1.250	0.898	1.080	0.930	1.100
S6	0.923	1.100	1.030	0.894	0.898	1.010	0.984	0.918	0.944
S2	0.953	0.955	0.948	1.090	1.080	0.984	0.902	1.200	1.180
S1	1.050	0.877	0.965	1.210	0.930	0.918	1.200	1.320	1.110
S3	1.140	0.867	1.020	1.080	1.100	0.944	1.180	1.110	0.933

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 3 0.0016

plastid plastid 1800 0.9735

clusters with similarity:

Cluster	Number of similarity hits

245

1

clusters connected through mates:

Cluster	Number of shared read pairs	k

204	12	0.207
245	9	0.161
8260	4	0.0988
134	2	0.0211
164	2	0.0241
35	1	0.000985
107	1	0.00164
118	1	0.00205
125	1	0.00191
191	1	0.0164
197	1	0.0145
218	1	0.0194
282	1	0.0161
572	1	0.019
12200	1	0.025
19800	1	0.025
33800	1	0.0253
43900	1	0.0253

CL156 ----> CL204

No. of shared pairs: :12