Cluster no. 155

Go back to cluster table

Cluster is part of supercluster: 70

Cluster characteristics:

size 1952
size_real 1952
ecount 9314
supercluster 70
annotations_summary 34.37% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
11.68% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
10.55% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
3.13% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
2.72% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
2.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.67% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.51% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.41% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.20% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
pair_completeness 0.666951323654996
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000512295081967213
satellite_probability 2.69560262167269e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2
S5 638
S4 650
S7 0
S9 0
S6 660
S2 2
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 5 10.0 0 0 5.5 0.0 0 0
S5 5.0 945 1070.0 0 0 984.0 3.0 0 0
S4 10.0 1070 1110.0 0 0 1070.0 0.5 0 0
S7 0.0 0 0.0 0 0 0.0 0.0 0 0
S9 0.0 0 0.0 0 0 0.0 0.0 0 0
S6 5.5 984 1070.0 0 0 972.0 2.5 0 0
S2 0.0 3 0.5 0 0 2.5 0.0 0 0
S1 0.0 0 0.0 0 0 0.0 0.0 0 0
S3 0.0 0 0.0 0 0 0.0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.756 1.400 NA NA 0.825 0.000 NA NA
S5 0.756 0.975 1.020 NA NA 1.010 1.550 NA NA
S4 1.400 1.020 0.976 NA NA 1.010 0.239 NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 0.825 1.010 1.010 NA NA 0.986 1.280 NA NA
S2 0.000 1.550 0.239 NA NA 1.280 0.000 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 61 0.03125
CRM Ty3-GAG CRM Ty3-GAG 13 0.00666
Tekay Ty3-GAG Tekay Ty3-GAG 53 0.02715
Reina Ty3-INT Reina Ty3-INT 4 0.00205
Tekay Ty3-INT Tekay Ty3-INT 671 0.34375
Tekay Ty3-PROT Tekay Ty3-PROT 41 0.02100
Tekay Ty3-RH Tekay Ty3-RH 206 0.10553
Chlamyvir Ty3-RT Chlamyvir Ty3-RT 10 0.00512
Reina Ty3-RT Reina Ty3-RT 8 0.00410
Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00051
Tekay Ty3-RT Tekay Ty3-RT 228 0.11680

clusters with similarity:

Cluster Number of similarity hits
14 31
56 8
121 8
70 7
3 4
29 4
101 4
165 2
67 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
56 50 0.0613
14 35 0.0194
29 19 0.0154
3 17 0.00564
2170 10 0.0499
121 9 0.0195
4800 5 0.0253
3650 4 0.0202
3390 3 0.0152
4440 2 0.0102
34800 2 0.0102
43500 2 0.0102
48600 2 0.0102
49000 2 0.0102
64800 2 0.0102
6 1 0.000352
15 1 0.000405
31 1 0.00106
34 1 0.000729
43 1 0.000688
48 1 0.000855
67 1 0.000952
70 1 0.00193
71 1 0.00089
86 1 0.00144
88 1 0.00118
99 1 0.00139
135 1 0.0024
233 1 0.00392
18100 1 0.00512
19800 1 0.00509
26500 1 0.0051
31300 1 0.0051
40000 1 0.0051
45700 1 0.0051
56100 1 0.0051
60100 1 0.0051
62700 1 0.0051
64400 1 0.0051
67400 1 0.0051
68900 1 0.0051
70600 1 0.0051

CL155 ----> CL56

image

No. of shared pairs: :50

CL155 ----> CL14

image

No. of shared pairs: :35

CL155 ----> CL29

image

No. of shared pairs: :19

CL155 ----> CL3

image

No. of shared pairs: :17

CL155 ----> CL2168

image

No. of shared pairs: :10