Cluster no. 154

Cluster no. 154

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Cluster is part of supercluster: 21

Cluster characteristics:

size	1965
size_real	1965
ecount	16663
supercluster	21
annotations_summary
pair_completeness	0.765498652291105
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0575063613231552
satellite_probability	3.02598182057364e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1
S5	2
S4	4
S7	0
S9	3
S6	9
S2	598
S1	691
S3	657

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0.0	0.0	0	0.0	0.0	0.5	0.0	0.0
S5	0.0	0.0	0.0	0	0.0	0.0	14.5	17.5	18.5
S4	0.0	0.0	0.0	0	0.0	0.0	5.5	5.0	3.0
S7	0.0	0.0	0.0	0	0.0	0.0	0.0	0.0	0.0
S9	0.0	0.0	0.0	0	1.0	0.0	11.0	13.0	7.5
S6	0.0	0.0	0.0	0	0.0	2.0	9.5	15.5	12.5
S2	0.5	14.5	5.5	0	11.0	9.5	1660.0	1750.0	1800.0
S1	0.0	17.5	5.0	0	13.0	15.5	1750.0	1860.0	1870.0
S3	0.0	18.5	3.0	0	7.5	12.5	1800.0	1870.0	2040.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.00	0.000	0.000	NA	0.000	0.000	3.170	0.00	0.000
S5	0.00	0.000	0.000	NA	0.000	0.000	0.911	1.04	1.060
S4	0.00	0.000	0.000	NA	0.000	0.000	1.290	1.12	0.644
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	0.00	0.000	0.000	NA	15.800	0.000	1.070	1.21	0.669
S6	0.00	0.000	0.000	NA	0.000	21.400	0.763	1.18	0.917
S2	3.17	0.911	1.290	NA	1.070	0.763	1.010	1.00	0.993
S1	0.00	1.040	1.120	NA	1.210	1.180	1.000	1.01	0.980
S3	0.00	1.060	0.644	NA	0.669	0.917	0.993	0.98	1.030

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

77

18

clusters connected through mates:

Cluster	Number of shared read pairs	k

77	60	0.163
1460	9	0.0657
228	8	0.0383
692	7	0.0505
1610	7	0.0517
459	6	0.0433
477	5	0.037
928	5	0.0358
2890	5	0.0373
523	4	0.0283
570	4	0.0285
6900	4	0.0301
9940	4	0.0302
3390	3	0.0223
5460	3	0.0225
5550	3	0.0226
12600	3	0.0227
7870	2	0.0151
10300	2	0.0151
15300	2	0.0152
23700	2	0.0152
33100	2	0.0152
36500	2	0.0152
58400	2	0.0152
42	1	0.0014
58	1	0.00142
110	1	0.00131
339	1	0.00676
1770	1	0.00741
2630	1	0.00741
5550	1	0.00752
7040	1	0.00752
8350	1	0.00755
12800	1	0.00758
16600	1	0.00758
18000	1	0.00758
22600	1	0.0076
27400	1	0.0076
40800	1	0.0076
46700	1	0.0076
47200	1	0.0076
48400	1	0.0076
63200	1	0.0076

CL154 ----> CL77

No. of shared pairs: :60