Cluster no. 147

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Cluster is part of supercluster: 5

Cluster characteristics:

size 2191
size_real 2191
ecount 6901
supercluster 5
annotations_summary
pair_completeness 0.428292046936115
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000456412596987677
satellite_probability 5.12148319141113e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 5
S4 3
S7 4
S9 0
S6 2
S2 703
S1 726
S3 747
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0 0 0 0.0 1.0 2 1.0
S5 0 0.0 0 0 0 0.0 5.5 5 3.5
S4 0 0.0 0 0 0 0.0 3.0 1 4.0
S7 0 0.0 0 1 0 0.0 2.0 2 3.0
S9 0 0.0 0 0 0 0.0 0.0 0 0.0
S6 0 0.0 0 0 0 0.0 2.5 3 3.5
S2 1 5.5 3 2 0 2.5 677.0 668 738.0
S1 2 5.0 1 2 0 3.0 668.0 800 836.0
S3 1 3.5 4 3 0 3.5 738.0 836 854.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.000 0.000 0.000 NA 0.000 0.822 1.490 0.706
S5 0.000 0.000 0.000 0.000 NA 0.000 1.290 1.060 0.706
S4 0.000 0.000 0.000 0.000 NA 0.000 1.230 0.372 1.410
S7 0.000 0.000 0.000 108.000 NA 0.000 0.822 0.745 1.060
S9 NA NA NA NA NA NA NA NA NA
S6 0.000 0.000 0.000 0.000 NA 0.000 0.914 0.993 1.100
S2 0.822 1.290 1.230 0.822 NA 0.914 1.060 0.949 0.994
S1 1.490 1.060 0.372 0.745 NA 0.993 0.949 1.030 1.020
S3 0.706 0.706 1.410 1.060 NA 1.100 0.994 1.020 0.987

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
38 30
143 2

clusters connected through mates:

Cluster Number of shared
read pairs
k
38 211 0.144
143 22 0.0257
365 18 0.0385
670 14 0.0309
153 13 0.0155
773 9 0.02
788 8 0.0177
1600 5 0.0113
1410 4 0.00898
3180 4 0.00906
4440 4 0.00908
8980 4 0.00908
739 3 0.00665
1400 3 0.00678
1740 3 0.00676
2200 3 0.00677
5710 3 0.0068
17300 3 0.00682
46 2 0.00148
57 2 0.00162
96 2 0.00203
820 2 0.00449
1670 2 0.00449
2190 2 0.00451
2400 2 0.00453
3950 2 0.00454
3960 2 0.00452
6830 2 0.00454
10200 2 0.00454
10500 2 0.00454
11300 2 0.00455
11400 2 0.00455
14200 2 0.00455
14400 2 0.00455
14700 2 0.00455
15400 2 0.00455
15700 2 0.00455
18900 2 0.00455
31000 2 0.00455
41300 2 0.00455
43100 2 0.00455
48200 2 0.00455
48600 2 0.00455
54800 2 0.00455
54800 2 0.00455
55100 2 0.00455
58300 2 0.00455
59700 2 0.00455
60700 2 0.00455
62100 2 0.00455
64000 2 0.00455
65200 2 0.00455
21 1 0.00109
23 1 0.000637
77 1 0.00148
108 1 0.00118
110 1 0.000932
113 1 0.00122
300 1 0.00216
321 1 0.00214
413 1 0.00219
696 1 0.00224
810 1 0.00223
1520 1 0.00226
1540 1 0.00225
1930 1 0.00226
2450 1 0.00225
5990 1 0.00227
7150 1 0.00228
7250 1 0.00227
8620 1 0.00228
9470 1 0.00228
9910 1 0.00227
10500 1 0.00227
10700 1 0.00228
11900 1 0.00227
12800 1 0.00227
12800 1 0.00227
13200 1 0.00228
14300 1 0.00227
16100 1 0.00227
17100 1 0.00227
18000 1 0.00227
18300 1 0.00227
18600 1 0.00228
18600 1 0.00228
19300 1 0.00228
19500 1 0.00227
19900 1 0.00227
20200 1 0.00228
22300 1 0.00228
25100 1 0.00228
25300 1 0.00228
25700 1 0.00228
26700 1 0.00228
29100 1 0.00228
29300 1 0.00228
30900 1 0.00228
33900 1 0.00228
34100 1 0.00228
34100 1 0.00228
35200 1 0.00228
35300 1 0.00228
36900 1 0.00228
37600 1 0.00228
40300 1 0.00228
42100 1 0.00228
42300 1 0.00228
42500 1 0.00228
43700 1 0.00228
46000 1 0.00228
50900 1 0.00228
52400 1 0.00228
55200 1 0.00228
55800 1 0.00228
55900 1 0.00228
56800 1 0.00228
57800 1 0.00228
61100 1 0.00228
63000 1 0.00228
63700 1 0.00228
63900 1 0.00228
64100 1 0.00228
65600 1 0.00228
65700 1 0.00228
66300 1 0.00228
68000 1 0.00228
69600 1 0.00228
70300 1 0.00228
70900 1 0.00228

CL147 ----> CL38

image

No. of shared pairs: :211

CL147 ----> CL143

image

No. of shared pairs: :22

CL147 ----> CL365

image

No. of shared pairs: :18

CL147 ----> CL670

image

No. of shared pairs: :14

CL147 ----> CL153

image

No. of shared pairs: :13