Cluster no. 146

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Cluster is part of supercluster: 67

Cluster characteristics:

size 2194
size_real 2194
ecount 7197
supercluster 67
annotations_summary
pair_completeness 0.355995055624227
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000455788514129444
satellite_probability 8.64114621709583e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 720
S4 716
S7 0
S9 0
S6 752
S2 2
S1 2
S3 1
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0.5 0.5 0 0 0 0.0 0.0 0
S5 0.5 775.0 742.0 0 0 758 0.5 13.0 1
S4 0.5 742.0 820.0 0 0 846 0.5 6.5 0
S7 0.0 0.0 0.0 0 0 0 0.0 0.0 0
S9 0.0 0.0 0.0 0 0 0 0.0 0.0 0
S6 0.0 758.0 846.0 0 0 845 1.0 8.0 1
S2 0.0 0.5 0.5 0 0 1 0.0 0.0 0
S1 0.0 13.0 6.5 0 0 8 0.0 0.0 0
S3 0.0 1.0 0.0 0 0 1 0.0 0.0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.00 1.570 1.490 NA NA 0.000 0.000 0.000 0.00
S5 1.57 1.060 0.965 NA NA 0.969 0.786 1.490 1.57
S4 1.49 0.965 1.010 NA NA 1.020 0.745 0.704 0.00
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 0.00 0.969 1.020 NA NA 1.010 1.460 0.851 1.46
S2 0.00 0.786 0.745 NA NA 1.460 0.000 0.000 0.00
S1 0.00 1.490 0.704 NA NA 0.851 0.000 0.000 0.00
S3 0.00 1.570 0.000 NA NA 1.460 0.000 0.000 0.00

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
28 21
130 5
60 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
28 124 0.0797
60 122 0.0811
130 26 0.028
3 8 0.00239
14 6 0.00282
2020 6 0.0114
1170 5 0.00948
1980 5 0.00951
6 4 0.00126
1380 4 0.00758
2450 4 0.00762
34 3 0.00177
61 3 0.00221
3460 3 0.00571
1 2 0.000893
19 2 0.000897
37 2 0.00158
39 2 0.00135
56 2 0.00175
67 2 0.00145
88 2 0.00171
89 2 0.00201
117 2 0.00225
417 2 0.00372
877 2 0.00377
1120 2 0.00379
1790 2 0.0038
2780 2 0.00382
2850 2 0.00382
2950 2 0.00381
3160 2 0.00382
4840 2 0.00382
5700 2 0.00382
8680 2 0.00382
12600 2 0.00383
15100 2 0.00383
15600 2 0.00383
17800 2 0.00383
30900 2 0.00383
41200 2 0.00383
42000 2 0.00383
51800 2 0.00383
52400 2 0.00383
54000 2 0.00383
61600 2 0.00383
69200 2 0.00383
70500 2 0.00383
13 1 0.000489
24 1 0.000878
29 1 0.000641
33 1 0.000439
41 1 0.000901
43 1 0.000562
55 1 0.000808
76 1 0.000941
80 1 0.000793
84 1 0.00079
93 1 0.00085
95 1 0.000937
99 1 0.000959
123 1 0.000915
126 1 0.00107
135 1 0.00135
141 1 0.00143
145 1 0.00154
178 1 0.00141
186 1 0.0016
216 1 0.00155
369 1 0.00179
514 1 0.00186
1090 1 0.0019
1230 1 0.0019
1470 1 0.0019
4990 1 0.00191
5660 1 0.00191
7390 1 0.00191
7440 1 0.00191
7780 1 0.00191
8680 1 0.00191
10600 1 0.00191
12300 1 0.00191
12600 1 0.00191
14000 1 0.00192
14100 1 0.00191
14500 1 0.00191
15300 1 0.00192
15400 1 0.00191
16200 1 0.00192
18100 1 0.00191
18800 1 0.00191
20400 1 0.00192
20700 1 0.00192
21000 1 0.00192
27100 1 0.00192
27400 1 0.00192
27900 1 0.00192
29900 1 0.00192
32000 1 0.00192
34100 1 0.00192
34700 1 0.00192
34900 1 0.00192
38800 1 0.00192
41500 1 0.00192
42200 1 0.00192
48100 1 0.00192
50600 1 0.00192
51600 1 0.00192
51700 1 0.00192
53700 1 0.00192
55700 1 0.00192
56200 1 0.00192
60500 1 0.00192
64400 1 0.00192
64900 1 0.00192
66200 1 0.00192
66600 1 0.00192
67000 1 0.00192
69700 1 0.00192

CL146 ----> CL28

image

No. of shared pairs: :124

CL146 ----> CL60

image

No. of shared pairs: :122

CL146 ----> CL130

image

No. of shared pairs: :26