Cluster no. 145

Go back to cluster table

Cluster is part of supercluster: 65

Cluster characteristics:

size 2291
size_real 2291
ecount 25375
supercluster 65
annotations_summary 5.37% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
pair_completeness 0.798273155416013
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.187047101449275
satellite_probability 3.30104984318694e-14
consensus None
TAREAN_annotation Other
orientation_score 0.993970878204156

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 780
S4 777
S7 0
S9 0
S6 728
S2 6
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0.0 0 0 0.0 0.0 0 0
S5 0 3020 3190.0 0 0 2700.0 23.0 0 0
S4 0 3190 3250.0 0 0 2820.0 27.5 0 0
S7 0 0 0.0 0 0 0.0 0.0 0 0
S9 0 0 0.0 0 0 0.0 0.0 0 0
S6 0 2700 2820.0 0 0 2530.0 27.5 0 0
S2 0 23 27.5 0 0 27.5 0.0 0 0
S1 0 0 0.0 0 0 0.0 0.0 0 0
S3 0 0 0.0 0 0 0.0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.999 1.010 NA NA 0.986 0.871 NA NA
S4 NA 1.010 0.994 NA NA 0.992 1.000 NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 0.986 0.992 NA NA 1.020 1.150 NA NA
S2 NA 0.871 1.000 NA NA 1.150 0.000 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 123 0.054

clusters with similarity:

Cluster Number of similarity hits
98 9
28 4

clusters connected through mates:

Cluster Number of shared
read pairs		 k
98 12 0.0221
408 9 0.0659
707 7 0.0519
28 6 0.00515
5410 6 0.0456
6 5 0.0018
2480 4 0.0302
8390 4 0.0307
3 3 0.00102
14 3 0.00173
15 3 0.00125
31 3 0.00342
48 3 0.00272
89 3 0.00499
2710 3 0.0229
3820 3 0.0229
4980 3 0.023
13600 3 0.0231
18000 3 0.0231
16 2 0.00312
39 2 0.00184
52 2 0.00294
61 2 0.00207
66 2 0.00217
141 2 0.00656
185 2 0.00493
18600 2 0.0154
19500 2 0.0154
44800 2 0.0154
56900 2 0.0154
1 1 0.000541
2 1 0.000597
10 1 0.000585
20 1 0.000962
26 1 0.000948
33 1 0.00053
45 1 0.000641
56 1 0.00133
60 1 0.000899
92 1 0.00172
95 1 0.00148
99 1 0.00154
105 1 0.00153
109 1 0.00169
115 1 0.00121
121 1 0.00253
146 1 0.00154
211 1 0.00324
236 1 0.00464
237 1 0.00494
647 1 0.00714
903 1 0.00763
1160 1 0.00746
2840 1 0.00758
2970 1 0.00758
3340 1 0.00772
5930 1 0.00769
6120 1 0.00763
6980 1 0.00769
10600 1 0.00772
14500 1 0.00769
17600 1 0.00775
18600 1 0.00769
30000 1 0.00772
39900 1 0.00772
41400 1 0.00772
48200 1 0.00772
52100 1 0.00772

CL145 ----> CL98

image

No. of shared pairs: :12