Cluster no. 144

Cluster no. 144

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Cluster is part of supercluster: 64

Cluster characteristics:

size	2325
size_real	2325
ecount	49376
supercluster	64
annotations_summary	15.23% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.43% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT 0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness	0.708302718589273
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.511397849462366
satellite_probability	3.0515192319516e-05
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2
S5	756
S4	751
S7	4
S9	2
S6	809
S2	0
S1	0
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	4	2.0	0.0	0	4.5	0	0	0
S5	4.0	5860	4860.0	16.0	48	5990.0	0	0	0
S4	2.0	4860	4420.0	12.5	42	5260.0	0	0	0
S7	0.0	16	12.5	0.0	0	14.5	0	0	0
S9	0.0	48	42.0	0.0	1	54.0	0	0	0
S6	4.5	5990	5260.0	14.5	54	6500.0	0	0	2
S2	0.0	0	0.0	0.0	0	0.0	0	0	0
S1	0.0	0	0.0	0.0	0	0.0	0	0	0
S3	0.0	0	0.0	0.0	0	2.0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	1.120	0.645	0.000	0.000	1.190	NA	NA	0.00
S5	1.120	1.030	0.980	1.100	0.975	0.990	NA	NA	0.00
S4	0.645	0.980	1.030	0.984	0.980	0.998	NA	NA	0.00
S7	0.000	1.100	0.984	0.000	0.000	0.935	NA	NA	0.00
S9	0.000	0.975	0.980	0.000	2.350	1.030	NA	NA	0.00
S6	1.190	0.990	0.998	0.935	1.030	1.010	NA	NA	2.77
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	0.000	0.000	0.000	0.000	0.000	2.770	NA	NA	0.00

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-RH Ale Ty1-RH 1 0.00043

TatIII Ty3-INT TatIII Ty3-INT 1 0.00043

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 10 0.00430

TatV Ty3-INT TatV Ty3-INT 354 0.15226

clusters with similarity:

Cluster	Number of similarity hits

217

1

clusters connected through mates:

Cluster	Number of shared read pairs	k

217	11	0.0435
946	9	0.0438
1260	7	0.0343
1140	4	0.0198
3	3	0.000994
60	3	0.00254
4120	3	0.0149
4200	3	0.0149
4970	3	0.015
7240	3	0.015
1690	2	0.0098
3270	2	0.00998
3420	2	0.00993
4990	2	0.00993
6810	2	0.00995
10800	2	0.00998
14100	2	0.01
14900	2	0.01
18100	2	0.01
23800	2	0.01
31900	2	0.01
33500	2	0.01
35800	2	0.01
47700	2	0.01
48000	2	0.01
50700	2	0.01
66500	2	0.01
1	1	0.000522
6	1	0.000352
15	1	0.000405
56	1	0.00122
61	1	0.000965
80	1	0.00107
82	1	0.0012
95	1	0.00134
130	1	0.00165
164	1	0.00412
444	1	0.00458
537	1	0.00466
891	1	0.0049
1680	1	0.00495
2020	1	0.00494
2040	1	0.00499
3120	1	0.00496
3580	1	0.00498
3970	1	0.00498
5130	1	0.00496
5530	1	0.005
6950	1	0.005
7020	1	0.00498
7290	1	0.005
8160	1	0.00499
9570	1	0.00501
10700	1	0.00499
11700	1	0.005
12200	1	0.005
14700	1	0.005
15200	1	0.00503
15900	1	0.005
17700	1	0.005
22000	1	0.00501
26300	1	0.00501
28200	1	0.00501
29000	1	0.00501
30100	1	0.00501
33700	1	0.00501
39100	1	0.00501
44000	1	0.00501
45200	1	0.00501
48700	1	0.00501
56500	1	0.00501
56800	1	0.00501
58300	1	0.00501
60300	1	0.00501
61000	1	0.00501
67800	1	0.00501

CL144 ----> CL217

No. of shared pairs: :11