Cluster no. 141

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Cluster is part of supercluster: 63

Cluster characteristics:

size 2335
size_real 2335
ecount 26393
supercluster 63
annotations_summary 14.26% Class_I/LINE:LINE-RT
7.41% Class_I/LINE:LINE-ENDO
0.09% organelle/mitochondria
pair_completeness 0.73735119047619
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000428265524625268
satellite_probability 8.20691448488047e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 3
S5 795
S4 732
S7 0
S9 0
S6 801
S2 2
S1 2
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 18.5 18.0 0 0 16 0.5 0 0
S5 18.5 3190.0 2810.0 0 0 3110 11.5 0 0
S4 18.0 2810.0 2600.0 0 0 2720 16.5 0 0
S7 0.0 0.0 0.0 0 0 0 0.0 0 0
S9 0.0 0.0 0.0 0 0 0 0.0 0 0
S6 16.0 3110.0 2720.0 0 0 3140 16.0 2 0
S2 0.5 11.5 16.5 0 0 16 0.0 0 0
S1 0.0 0.0 0.0 0 0 2 0.0 1 0
S3 0.0 0.0 0.0 0 0 0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 1.010 1.100 NA NA 0.885 5.600 0.00 NA
S5 1.010 1.010 0.995 NA NA 0.998 0.747 0.00 NA
S4 1.100 0.995 1.030 NA NA 0.977 1.200 0.00 NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 0.885 0.998 0.977 NA NA 1.020 1.050 1.96 NA
S2 5.600 0.747 1.200 NA NA 1.050 0.000 0.00 NA
S1 0.000 0.000 0.000 NA NA 1.960 0.000 2930.00 NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 2 0.00086
LINE LINE-ENDO LINE LINE-ENDO 173 0.07409
LINE LINE-RT LINE LINE-RT 333 0.14261

clusters connected through mates:

Cluster Number of shared
read pairs		 k
3 6 0.002
967 6 0.0324
9810 4 0.0224
34 3 0.00222
84 3 0.00325
1020 3 0.0162
15400 3 0.0169
6 2 0.000709
19 2 0.00106
28 2 0.00165
35 2 0.00173
37 2 0.00218
41 2 0.00261
43 2 0.00139
47 2 0.00177
49 2 0.00117
55 2 0.00224
81 2 0.00367
82 2 0.00248
99 2 0.00286
145 2 0.00656
257 2 0.00891
15000 2 0.0112
19700 2 0.0112
36300 2 0.0113
39900 2 0.0113
40400 2 0.0113
45700 2 0.0113
10 1 0.000569
13 1 0.000588
14 1 0.000561
24 1 0.00126
25 1 0.00107
26 1 0.000907
31 1 0.00108
33 1 0.000517
39 1 0.000881
48 1 0.000869
56 1 0.00125
60 1 0.000862
61 1 0.000986
62 1 0.00168
67 1 0.000969
93 1 0.0012
95 1 0.00138
100 1 0.00165
112 1 0.00196
126 1 0.00171
133 1 0.004
146 1 0.00143
161 1 0.00182
178 1 0.00274
179 1 0.00225
184 1 0.00223
208 1 0.00277
219 1 0.00499
240 1 0.00441
241 1 0.00399
242 1 0.00341
252 1 0.00389
291 1 0.00404
567 1 0.00518
4230 1 0.00562
4540 1 0.00557
4640 1 0.0056
6250 1 0.00562
7170 1 0.00562
14200 1 0.00565
14200 1 0.00562
15000 1 0.00562
15500 1 0.00562
17900 1 0.00562
19300 1 0.00562
27200 1 0.00563
29900 1 0.00563
41300 1 0.00563
43400 1 0.00563
43900 1 0.00563
45200 1 0.00563
55600 1 0.00563
55800 1 0.00563
56100 1 0.00563
63000 1 0.00563
65200 1 0.00563
66400 1 0.00563
68200 1 0.00563