Cluster no. 140

Cluster no. 140

Go back to cluster table

Cluster is part of supercluster: 7

Cluster characteristics:

size	2339
size_real	2339
ecount	24531
supercluster	7
annotations_summary	0.17% Class_I/LTR/Ty1_copia/Tork:Ty1-INT 0.04% organelle/plastid
pair_completeness	0.450992555831266
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00128259940145361
satellite_probability	4.28848727092841e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	585
S5	3
S4	6
S7	549
S9	572
S6	3
S2	207
S1	202
S3	212

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	2650.0	0.0	11.5	2470.0	2500.0	5.0	0.0	0.0	16.0
S5	0.0	0.0	0.0	0.0	0.0	0.0	1.5	1.0	2.0
S4	11.5	0.0	0.0	13.0	8.5	0.0	10.0	7.5	8.0
S7	2470.0	0.0	13.0	2580.0	2490.0	7.0	1.5	0.0	13.0
S9	2500.0	0.0	8.5	2490.0	2410.0	8.5	3.0	2.5	17.5
S6	5.0	0.0	0.0	7.0	8.5	0.0	0.0	0.0	0.0
S2	0.0	1.5	10.0	1.5	3.0	0.0	195.0	202.0	203.0
S1	0.0	1.0	7.5	0.0	2.5	0.0	202.0	209.0	216.0
S3	16.0	2.0	8.0	13.0	17.5	0.0	203.0	216.0	197.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.1200	0.00	0.634	1.05000	1.0800	0.786	0.00000	0.000	0.0767
S5	0.0000	0.00	0.000	0.00000	0.0000	0.000	13.30000	8.590	16.3000
S4	0.6340	0.00	0.000	0.72400	0.4820	0.000	6.84000	4.950	5.0200
S7	1.0500	0.00	0.724	1.11000	1.0900	1.110	0.00793	0.000	0.0630
S9	1.0800	0.00	0.482	1.09000	1.0800	1.380	0.01610	0.013	0.0863
S6	0.7860	0.00	0.000	1.11000	1.3800	0.000	0.00000	0.000	0.0000
S2	0.0000	13.30	6.840	0.00793	0.0161	0.000	12.70000	12.700	12.1000
S1	0.0000	8.59	4.950	0.00000	0.0130	0.000	12.70000	12.600	12.4000
S3	0.0767	16.30	5.020	0.06300	0.0863	0.000	12.10000	12.400	10.7000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00043

Tork Ty1-INT Tork Ty1-INT 4 0.00171

clusters with similarity:

Cluster	Number of similarity hits

11	301
36	17
54	15
110	14
173	6
22	4
7	1
143	1
152	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

11	272	0.162
110	40	0.0371
54	38	0.0297
152	27	0.0335
173	17	0.0262
22	12	0.0058
36	12	0.00867
985	8	0.0177
91	5	0.00455
1660	5	0.0111
4	4	0.00196
8	4	0.00177
17	4	0.00194
1370	4	0.00888
12	3	0.00184
436	3	0.00647
7110	3	0.00674
996	2	0.00447
2050	2	0.00448
2820	2	0.00447
5370	2	0.00449
5920	2	0.00449
6820	2	0.00449
16900	2	0.0045
18400	2	0.0045
24800	2	0.00451
32200	2	0.00451
40300	2	0.00451
42700	2	0.00451
46700	2	0.00451
5	1	0.000434
21	1	0.00109
46	1	0.000739
65	1	0.00118
85	1	0.00105
100	1	0.00115
106	1	0.00118
111	1	0.00159
131	1	0.00128
176	1	0.00213
199	1	0.00187
245	1	0.00217
265	1	0.00198
699	1	0.00222
705	1	0.00221
954	1	0.00222
2570	1	0.00224
3310	1	0.00224
4730	1	0.00225
4890	1	0.00224
5490	1	0.00225
6230	1	0.00225
6370	1	0.00225
6650	1	0.00225
8600	1	0.00225
8940	1	0.00225
9450	1	0.00225
9830	1	0.00225
10400	1	0.00225
10500	1	0.00225
12300	1	0.00225
12900	1	0.00225
13900	1	0.00225
15000	1	0.00225
15500	1	0.00225
16000	1	0.00225
17600	1	0.00225
18300	1	0.00225
18500	1	0.00225
23100	1	0.00225
25200	1	0.00225
27400	1	0.00225
28500	1	0.00225
29500	1	0.00225
30800	1	0.00225
31300	1	0.00225
35600	1	0.00225
36500	1	0.00225
36600	1	0.00225
39200	1	0.00225
41200	1	0.00225
43100	1	0.00225
45000	1	0.00225
46100	1	0.00225
46100	1	0.00225
55300	1	0.00225
55600	1	0.00225
56900	1	0.00225
60700	1	0.00225
62600	1	0.00225
64700	1	0.00225
64900	1	0.00225
69500	1	0.00225

CL140 ----> CL11

No. of shared pairs: :272

CL140 ----> CL110

No. of shared pairs: :40

CL140 ----> CL54

No. of shared pairs: :38

CL140 ----> CL152

No. of shared pairs: :27

CL140 ----> CL173

No. of shared pairs: :17

CL140 ----> CL22

No. of shared pairs: :12

CL140 ----> CL36

No. of shared pairs: :12