Cluster no. 139

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Cluster is part of supercluster: 32

Cluster characteristics:

size	2380
size_real	2380
ecount	47462
supercluster	32
annotations_summary	38.57% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 7.61% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.21% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
pair_completeness	0.640248104755341
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0109243697478992
satellite_probability	2.63699184809533e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	714
S5	4
S4	0
S7	834
S9	820
S6	5
S2	0
S1	0
S3	3

comparative analysis - number of edges between species:

	S8	S5	S7	S9	S6	S3
S8	4200.0	18.0	5260.0	4650.0	36.5	19.5
S5	18.0	0.0	18.5	13.5	0.5	0.5
S4	0.0	0.0	0.0	0.0	0.0	0.0
S7	5260.0	18.5	6740.0	5700.0	34.0	24.5
S9	4650.0	13.5	5700.0	4920.0	24.5	13.5
S6	36.5	0.5	34.0	24.5	0.0	0.0
S2	0.0	0.0	0.0	0.0	0.0	0.0
S1	0.0	0.0	0.0	0.0	0.0	0.0
S3	19.5	0.5	24.5	13.5	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.991	1.180	NA	0.991	1.020	1.280	NA	NA	1.130
S5	1.180	0.000	NA	0.969	0.820	4.870	NA	NA	8.020
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	0.991	0.969	NA	1.010	0.994	0.951	NA	NA	1.130
S9	1.020	0.820	NA	0.994	0.995	0.795	NA	NA	0.721
S6	1.280	4.870	NA	0.951	0.795	0.000	NA	NA	0.000
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	1.130	8.020	NA	1.130	0.721	0.000	NA	NA	0.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 181 0.07605

CRM Ty3-INT CRM Ty3-INT 1 0.00042

Tekay Ty3-INT Tekay Ty3-INT 918 0.38571

Tekay Ty3-RT Tekay Ty3-RT 5 0.00210

clusters with similarity:

Cluster	Number of similarity hits

22	766
65	192
107	177
17	72
150	56

clusters connected through mates:

Cluster	Number of shared read pairs	k

22	105	0.0556
150	77	0.19
17	55	0.0293
65	50	0.0751
107	37	0.0445
91	19	0.0207
1050	9	0.0338
4	5	0.00269
1720	4	0.0151
3660	4	0.0151
3760	4	0.0151
12	3	0.00207
2900	3	0.0113
3020	3	0.0114
4520	3	0.0114
4840	3	0.0114
8	2	0.000963
9	2	0.00209
54	2	0.00182
83	2	0.00314
5830	2	0.00759
10000	2	0.0076
21	1	0.00135
53	1	0.00122
59	1	0.000697
69	1	0.000723
78	1	0.00074
79	1	0.00211
100	1	0.00145
102	1	0.00159
158	1	0.00316
166	1	0.00232
277	1	0.00341
866	1	0.00368
5390	1	0.00379
5950	1	0.0038
19600	1	0.00381
19700	1	0.00381
20700	1	0.00382
23400	1	0.00382
48600	1	0.00382
61700	1	0.00382
65100	1	0.00382

CL139 ----> CL22

No. of shared pairs: :105

CL139 ----> CL150

No. of shared pairs: :77

CL139 ----> CL17

No. of shared pairs: :55

CL139 ----> CL65

No. of shared pairs: :50

CL139 ----> CL107

No. of shared pairs: :37

CL139 ----> CL91

No. of shared pairs: :19