Cluster no. 136

Cluster no. 136

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Cluster is part of supercluster: 2

Cluster characteristics:

size	2432
size_real	2432
ecount	130722
supercluster	2
annotations_summary	0.08% organelle/mitochondria 0.04% organelle/plastid
pair_completeness	0.30752688172043
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.318256578947368
satellite_probability	2.87993837306807e-09
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	819
S5	8
S4	11
S7	802
S9	782
S6	3
S2	3
S1	4
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	14100	28.0	334.0	14600.0	13800.0	5.0	16.0	83.0	0
S5	28	0.0	0.5	26.0	20.5	0.5	0.0	0.0	0
S4	334	0.5	14.0	332.0	324.0	0.0	0.0	2.5	0
S7	14600	26.0	332.0	15300.0	14300.0	4.5	14.0	65.0	0
S9	13800	20.5	324.0	14300.0	13300.0	2.0	9.5	62.0	0
S6	5	0.5	0.0	4.5	2.0	0.0	0.0	0.0	0
S2	16	0.0	0.0	14.0	9.5	0.0	1.0	0.0	0
S1	83	0.0	2.5	65.0	62.0	0.0	0.0	0.0	0
S3	0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.997	1.130	1.010	0.997	1.010	1.270	1.200	1.190	NA
S5	1.130	0.000	0.859	1.010	0.849	72.100	0.000	0.000	NA
S4	1.010	0.859	1.800	0.967	1.010	0.000	0.000	1.530	NA
S7	0.997	1.010	0.967	1.000	1.000	1.100	1.010	0.897	NA
S9	1.010	0.849	1.010	1.000	0.995	0.521	0.734	0.912	NA
S6	1.270	72.100	0.000	1.100	0.521	0.000	0.000	0.000	NA
S2	1.200	0.000	0.000	1.010	0.734	0.000	79.700	0.000	NA
S1	1.190	0.000	1.530	0.897	0.912	0.000	0.000	0.000	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 2 0.00082

plastid plastid 1 0.00041

clusters with similarity:

Cluster	Number of similarity hits

18	1280
65	69

clusters connected through mates:

Cluster	Number of shared read pairs	k

18	551	0.29
65	52	0.0496
59	5	0.00275
17	3	0.00133
19400	3	0.00465
8	2	0.000813
2080	2	0.00308
3520	2	0.00309
3590	2	0.00309
5810	2	0.00309
7760	2	0.0031
9510	2	0.0031
11500	2	0.0031
12100	2	0.0031
15200	2	0.0031
15800	2	0.0031
17300	2	0.0031
22800	2	0.0031
25700	2	0.0031
29900	2	0.0031
30500	2	0.0031
32400	2	0.0031
42000	2	0.0031
42600	2	0.0031
54200	2	0.0031
58200	2	0.0031
61300	2	0.0031
66200	2	0.0031
66700	2	0.0031
70300	2	0.0031
70600	2	0.0031
5	1	0.000399
22	1	0.00044
32	1	0.00081
54	1	0.000676
162	1	0.000874
253	1	0.00142
602	1	0.00151
2400	1	0.00155
5540	1	0.00155
7690	1	0.00155
8800	1	0.00155
9210	1	0.00155
9940	1	0.00155
10700	1	0.00155
10800	1	0.00155
11400	1	0.00155
12200	1	0.00155
12300	1	0.00155
12700	1	0.00155
13300	1	0.00155
13300	1	0.00155
16900	1	0.00155
17100	1	0.00155
18500	1	0.00155
19100	1	0.00155
19400	1	0.00155
20400	1	0.00155
21800	1	0.00155
24100	1	0.00155
24800	1	0.00155
31200	1	0.00155
31400	1	0.00155
31800	1	0.00155
32200	1	0.00155
33900	1	0.00155
37700	1	0.00155
39800	1	0.00155
39800	1	0.00155
40400	1	0.00155
40900	1	0.00155
41000	1	0.00155
41300	1	0.00155
42000	1	0.00155
43800	1	0.00155
45100	1	0.00155
46300	1	0.00155
46400	1	0.00155
47500	1	0.00155
47500	1	0.00155
48200	1	0.00155
52700	1	0.00155
56200	1	0.00155
56500	1	0.00155
57800	1	0.00155
60000	1	0.00155
60300	1	0.00155
60700	1	0.00155
63600	1	0.00155
65400	1	0.00155
67000	1	0.00155
67400	1	0.00155
69300	1	0.00155

CL136 ----> CL18

No. of shared pairs: :551

CL136 ----> CL65

No. of shared pairs: :52