Cluster no. 134

Cluster no. 134

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Cluster is part of supercluster: 40

Cluster characteristics:

size	2441
size_real	2441
ecount	37139
supercluster	40
annotations_summary	99.63% organelle/plastid 0.37% organelle/mitochondria
pair_completeness	0.911511354737666
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000409668168783286
satellite_probability	2.49088588504597e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	160
S5	476
S4	486
S7	176
S9	247
S6	448
S2	166
S1	161
S3	121

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	153	450	484	174	240	416	160	174	112
S5	450	1460	1470	528	683	1370	460	469	370
S4	484	1470	1550	512	762	1410	505	483	358
S7	174	528	512	209	301	470	170	182	137
S9	240	683	762	301	374	667	262	256	170
S6	416	1370	1410	470	667	1260	472	422	329
S2	160	460	505	170	262	472	176	166	144
S1	174	469	483	182	256	422	166	169	120
S3	112	370	358	137	170	329	144	120	88

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.020	0.975	1.010	1.020	1.010	0.961	1.000	1.120	0.966
S5	0.975	1.030	1.000	1.010	0.941	1.030	0.936	0.984	1.040
S4	1.010	1.000	1.010	0.942	1.010	1.020	0.990	0.976	0.966
S7	1.020	1.010	0.942	1.080	1.120	0.956	0.936	1.030	1.040
S9	1.010	0.941	1.010	1.120	1.010	0.979	1.040	1.050	0.931
S6	0.961	1.030	1.020	0.956	0.979	1.010	1.020	0.942	0.981
S2	1.000	0.936	0.990	0.936	1.040	1.020	1.030	1.000	1.160
S1	1.120	0.984	0.976	1.030	1.050	0.942	1.000	1.050	1.000
S3	0.966	1.040	0.966	1.040	0.931	0.981	1.160	1.000	0.975

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 9 0.0037

plastid plastid 2432 0.9963

clusters with similarity:

Cluster	Number of similarity hits

164	17
187	11

clusters connected through mates:

Cluster	Number of shared read pairs	k

187	25	0.27
164	18	0.178
219	3	0.0373
156	2	0.0211
234	2	0.0284
1	1	0.000563
19	1	0.000566
49	1	0.000626
64	1	0.00113
83	1	0.00232
142	1	0.00407
176	1	0.012
197	1	0.0115
201	1	0.0125
214	1	0.0126
15500	1	0.0172

CL134 ----> CL187

No. of shared pairs: :25

CL134 ----> CL164

No. of shared pairs: :18