Cluster no. 133

Cluster no. 133

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Cluster is part of supercluster: 31

Cluster characteristics:

size	2451
size_real	2451
ecount	67473
supercluster	31
annotations_summary	75.15% 45S_rDNA/25S_rDNA
pair_completeness	0.886836027713626
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000407996736026112
satellite_probability	3.92929639329527e-24
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	163
S5	416
S4	429
S7	194
S9	184
S6	440
S2	226
S1	187
S3	212

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	425	521	582	522	498	502	458	418	454
S5	521	2540	2450	629	623	2600	764	646	702
S4	582	2450	2660	739	698	2650	844	805	790
S7	522	629	739	613	598	658	564	506	541
S9	498	623	698	598	529	600	546	447	494
S6	502	2600	2650	658	600	2760	693	646	716
S2	458	764	844	564	546	693	835	636	726
S1	418	646	805	506	447	646	636	582	648
S3	454	702	790	541	494	716	726	648	693

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.500	0.699	0.734	1.500	1.520	0.655	1.160	1.210	1.210
S5	0.699	1.300	1.180	0.689	0.728	1.290	0.740	0.712	0.717
S4	0.734	1.180	1.200	0.760	0.766	1.240	0.768	0.833	0.757
S7	1.500	0.689	0.760	1.430	1.490	0.700	1.170	1.190	1.180
S9	1.520	0.728	0.766	1.490	1.410	0.680	1.210	1.120	1.150
S6	0.655	1.290	1.240	0.700	0.680	1.330	0.652	0.692	0.709
S2	1.160	0.740	0.768	1.170	1.210	0.652	1.530	1.330	1.400
S1	1.210	0.712	0.833	1.190	1.120	0.692	1.330	1.380	1.420
S3	1.210	0.717	0.757	1.180	1.150	0.709	1.400	1.420	1.410

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

25S_rDNA 25S_rDNA 1842 0.75

clusters with similarity:

Cluster	Number of similarity hits

158	110
244	16
224	8

clusters connected through mates:

Cluster	Number of shared read pairs	k

158	57	0.444
244	21	0.212
224	11	0.121
18600	3	0.04
3	1	0.000346
6	1	0.000368
14	1	0.000595
43	1	0.000751
65	1	0.00209
67	1	0.00108
68	1	0.00116
69	1	0.000836
86	1	0.00174
90	1	0.00134
106	1	0.00209
141	1	0.004
17800	1	0.0133

CL133 ----> CL158

No. of shared pairs: :57

CL133 ----> CL244

No. of shared pairs: :21

CL133 ----> CL224

No. of shared pairs: :11