Cluster no. 132

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Cluster is part of supercluster: 59

Cluster characteristics:

size 2454
size_real 2454
ecount 20710
supercluster 59
annotations_summary 18.62% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.821826280623608
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000407497962510187
satellite_probability 1.76339170420733e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 826
S4 838
S7 5
S9 0
S6 779
S2 2
S1 2
S3 2
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0.0 0 0.0 0.0 0.0 0.0
S5 0 2550.0 2430.0 12.0 0 2200.0 8.5 3.5 5.0
S4 0 2430.0 2490.0 10.0 0 2150.0 4.5 2.5 8.0
S7 0 12.0 10.0 0.0 0 6.5 0.0 0.0 0.0
S9 0 0.0 0.0 0.0 0 0.0 0.0 0.0 0.0
S6 0 2200.0 2150.0 6.5 0 1970.0 4.5 2.5 3.5
S2 0 8.5 4.5 0.0 0 4.5 0.0 0.0 0.0
S1 0 3.5 2.5 0.0 0 2.5 0.0 0.0 0.0
S3 0 5.0 8.0 0.0 0 3.5 0.0 0.0 1.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.010 0.984 1.210 NA 0.999 1.390 1.180 0.820
S4 NA 0.984 1.030 1.020 NA 0.989 0.751 0.859 1.340
S7 NA 1.210 1.020 0.000 NA 0.746 0.000 0.000 0.000
S9 NA NA NA NA NA NA NA NA NA
S6 NA 0.999 0.989 0.746 NA 1.020 0.841 0.962 0.654
S2 NA 1.390 0.751 0.000 NA 0.841 0.000 0.000 0.000
S1 NA 1.180 0.859 0.000 NA 0.962 0.000 0.000 0.000
S3 NA 0.820 1.340 0.000 NA 0.654 0.000 0.000 67.600

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 457 0.18623
Tekay Ty3-INT Tekay Ty3-INT 1 0.00041

clusters with similarity:

Cluster Number of similarity hits
80 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
7120 4 0.0327
14 3 0.00174
34 3 0.00231
126 3 0.00566
2980 3 0.0243
1 2 0.00109
3 2 0.00068
6 2 0.000724
19 2 0.00109
56 2 0.0027
646 2 0.0151
6190 2 0.0163
6560 2 0.0163
16400 2 0.0165
19500 2 0.0165
22500 2 0.0165
36500 2 0.0165
52700 2 0.0165
56000 2 0.0165
61900 2 0.0165
2 1 6e-04
10 1 0.000588
37 1 0.00116
43 1 0.000726
45 1 0.000645
52 1 0.00149
55 1 0.00119
66 1 0.0011
72 1 0.00128
80 1 0.00116
84 1 0.00116
87 1 0.00135
88 1 0.0013
97 1 0.00334
101 1 0.00167
112 1 0.0022
118 1 0.00176
122 1 0.00318
123 1 0.00145
135 1 0.00292
181 1 0.00203
194 1 0.0046
216 1 0.00412
217 1 0.00573
323 1 0.00565
369 1 0.00633
495 1 0.00772
587 1 0.0076
730 1 0.00794
3270 1 0.0082
3650 1 0.00823
6380 1 0.00823
6910 1 0.00823
12100 1 0.00823
13300 1 0.00823
19900 1 0.00823
31400 1 0.00826
33800 1 0.00826
37500 1 0.00826
50700 1 0.00826
56000 1 0.00826
56900 1 0.00826
64800 1 0.00826
69100 1 0.00826
70900 1 0.00826