Cluster no. 131

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Cluster is part of supercluster: 58

Cluster characteristics:

size 2512
size_real 2512
ecount 15043
supercluster 58
annotations_summary 6.57% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
2.95% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.64% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.20% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.12% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.08% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT
pair_completeness 0.573934837092732
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000398089171974522
satellite_probability 1.13992396794032e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 213
S5 10
S4 3
S7 190
S9 211
S6 2
S2 640
S1 619
S3 624
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 231 3.0 1.0 198.0 202.0 0.0 152.0 137.0 143.0
S5 3 1.0 0.0 2.5 4.0 0.5 33.5 24.0 33.5
S4 1 0.0 0.0 4.5 2.5 0.0 0.0 2.5 1.0
S7 198 2.5 4.5 210.0 212.0 0.0 144.0 134.0 120.0
S9 202 4.0 2.5 212.0 215.0 1.0 152.0 116.0 114.0
S6 0 0.5 0.0 0.0 1.0 0.0 11.5 9.5 12.0
S2 152 33.5 0.0 144.0 152.0 11.5 1300.0 1100.0 1220.0
S1 137 24.0 2.5 134.0 116.0 9.5 1100.0 1030.0 1120.0
S3 143 33.5 1.0 120.0 114.0 12.0 1220.0 1120.0 1230.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 3.050 0.415 1.230 2.730 2.800 0.000 0.519 0.526 0.504
S5 0.415 1.450 0.000 0.360 0.580 2.140 1.200 0.964 1.230
S4 1.230 0.000 0.000 5.750 3.220 0.000 0.000 0.890 0.327
S7 2.730 0.360 5.750 3.010 3.060 0.000 0.514 0.534 0.439
S9 2.800 0.580 3.220 3.060 3.130 0.429 0.545 0.467 0.420
S6 0.000 2.140 0.000 0.000 0.429 0.000 1.220 1.130 1.310
S2 0.519 1.200 0.000 0.514 0.545 1.220 1.150 1.090 1.120
S1 0.526 0.964 0.890 0.534 0.467 1.130 1.090 1.150 1.150
S3 0.504 1.230 0.327 0.439 0.420 1.310 1.120 1.150 1.160

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-GAG SIRE Ty1-GAG 165 0.0657
Ivana Ty1-INT Ivana Ty1-INT 5 0.0020
SIRE Ty1-INT SIRE Ty1-INT 16 0.0064
Alesia Ty1-PROT Alesia Ty1-PROT 2 0.0008
Ivana Ty1-PROT Ivana Ty1-PROT 3 0.0012
SIRE Ty1-PROT SIRE Ty1-PROT 74 0.0295

clusters with similarity:

Cluster Number of similarity hits
74 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
74 30 0.045
451 11 0.0306
1390 11 0.0317
619 8 0.0226
3470 8 0.0233
656 7 0.0202
7 5 0.00281
1380 5 0.0145
2150 5 0.0145
3930 5 0.0146
6540 5 0.0146
511 4 0.0111
550 4 0.0113
1460 4 0.0116
1850 4 0.0116
2630 4 0.0116
10900 4 0.0117
12 3 0.00196
905 3 0.00856
948 3 0.00871
1220 3 0.00867
1360 3 0.00867
1460 3 0.00868
1480 3 0.00876
2870 3 0.00871
3280 3 0.00875
3580 3 0.00873
4840 3 0.00875
5130 3 0.00875
5370 3 0.00877
6920 3 0.00876
7530 3 0.00877
10100 3 0.00877
10400 3 0.00877
13600 3 0.00878
53 2 0.00223
129 2 0.00349
1770 2 0.00582
2480 2 0.00581
4110 2 0.00582
4360 2 0.00583
4600 2 0.00583
5280 2 0.00585
5620 2 0.00586
6240 2 0.00586
7440 2 0.00587
7700 2 0.00585
8690 2 0.00585
9540 2 0.00585
11600 2 0.00586
11700 2 0.00586
13100 2 0.00586
14000 2 0.00586
16500 2 0.00586
18600 2 0.00586
19100 2 0.00586
22200 2 0.00587
26300 2 0.00587
31100 2 0.00587
37600 2 0.00587
41100 2 0.00587
58900 2 0.00587
61400 2 0.00587
63300 2 0.00587
5 1 0.000455
8 1 0.000464
9 1 0.000964
11 1 0.000633
17 1 0.000512
23 1 0.00068
30 1 0.000741
38 1 0.000731
40 1 0.0011
46 1 0.000799
59 1 0.000661
75 1 0.00106
77 1 0.00173
85 1 0.00118
104 1 0.0019
106 1 0.00134
113 1 0.00139
116 1 0.00147
125 1 0.00121
140 1 0.00128
150 1 0.00207
175 1 0.00186
189 1 0.00213
196 1 0.00202
210 1 0.00182
244 1 0.00274
274 1 0.00278
290 1 0.00268
301 1 0.00242
336 1 0.00278
340 1 0.0027
521 1 0.00282
1080 1 0.0029
1180 1 0.00288
1650 1 0.00289
1730 1 0.00289
1960 1 0.0029
2030 1 0.00289
2360 1 0.0029
4040 1 0.00292
4170 1 0.00292
4190 1 0.00292
5350 1 0.00292
5880 1 0.00292
5940 1 0.00292
6090 1 0.00292
7220 1 0.00293
7270 1 0.00293
8920 1 0.00292
9030 1 0.00292
9080 1 0.00293
9470 1 0.00293
9490 1 0.00292
10100 1 0.00293
11000 1 0.00292
11800 1 0.00293
11900 1 0.00294
12000 1 0.00294
12500 1 0.00293
13100 1 0.00293
14500 1 0.00293
14900 1 0.00294
17300 1 0.00293
17400 1 0.00293
19700 1 0.00294
22200 1 0.00293
24800 1 0.00293
27300 1 0.00293
28200 1 0.00293
30400 1 0.00293
33800 1 0.00293
39600 1 0.00293
42000 1 0.00293
42200 1 0.00293
42200 1 0.00293
42600 1 0.00293
43000 1 0.00293
46500 1 0.00293
47500 1 0.00293
48000 1 0.00293
50600 1 0.00293
52400 1 0.00293
53800 1 0.00293
55400 1 0.00293
55600 1 0.00293
56700 1 0.00293
58500 1 0.00293
61200 1 0.00293
62600 1 0.00293
65300 1 0.00293
69200 1 0.00293
69900 1 0.00293

CL131 ----> CL74

image

No. of shared pairs: :30

CL131 ----> CL451

image

No. of shared pairs: :11

CL131 ----> CL1391

image

No. of shared pairs: :11