Cluster no. 130

Go back to cluster table

Cluster is part of supercluster: 23

Cluster characteristics:

size 2542
size_real 2542
ecount 23467
supercluster 23
annotations_summary 8.54% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.90% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.16% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness 0.515802027429934
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0003933910306845
satellite_probability 2.0897667525813e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 4
S5 867
S4 903
S7 2
S9 0
S6 759
S2 4
S1 3
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 4.5 7.5 0.0 0 4.5 0.0 0.0 0
S5 4.5 2720.0 2750.0 1.0 0 2380.0 8.5 5.5 0
S4 7.5 2750.0 3060.0 1.0 0 2580.0 8.0 4.5 0
S7 0.0 1.0 1.0 0.0 0 1.5 0.0 0.0 0
S9 0.0 0.0 0.0 0.0 0 0.0 0.0 0.0 0
S6 4.5 2380.0 2580.0 1.5 0 2130.0 7.0 7.5 0
S2 0.0 8.5 8.0 0.0 0 7.0 0.0 0.0 0
S1 0.0 5.5 4.5 0.0 0 7.5 0.0 0.0 0
S3 0.0 0.0 0.0 0.0 0 0.0 0.0 0.0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.813 1.270 0.000 NA 0.900 0.000 0.000 NA
S5 0.813 1.030 0.975 0.851 NA 0.997 1.080 0.936 NA
S4 1.270 0.975 1.010 0.796 NA 1.010 0.949 0.717 NA
S7 0.000 0.851 0.796 0.000 NA 1.410 0.000 0.000 NA
S9 NA NA NA NA NA NA NA NA NA
S6 0.900 0.997 1.010 1.410 NA 0.988 0.983 1.410 NA
S2 0.000 1.080 0.949 0.000 NA 0.983 0.000 0.000 NA
S1 0.000 0.936 0.717 0.000 NA 1.410 0.000 0.000 NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-GAG CRM Ty3-GAG 4 0.0016
Reina Ty3-GAG Reina Ty3-GAG 23 0.0090
Tekay Ty3-GAG Tekay Ty3-GAG 217 0.0854

clusters with similarity:

Cluster Number of similarity hits
119 75
62 22
28 14
146 5

clusters connected through mates:

Cluster Number of shared
read pairs		 k
119 142 0.204
28 108 0.0749
62 65 0.0788
146 26 0.028
2200 7 0.0171
558 6 0.0145
1390 5 0.0121
1 4 0.00188
14 4 0.00199
87 4 0.00389
19 3 0.00142
31 3 0.0026
84 3 0.00261
89 3 0.00341
2480 3 0.0073
5980 3 0.00734
10900 3 0.00735
6 2 0.000656
29 2 0.00138
37 2 0.00174
86 2 0.00221
90 2 0.00186
92 2 0.00233
93 2 0.00188
117 2 0.00258
126 2 0.00245
792 2 0.00478
1620 2 0.00485
2890 2 0.00488
3140 2 0.00488
5200 2 0.0049
5810 2 0.00491
6370 2 0.0049
6480 2 0.00491
7660 2 0.0049
8790 2 0.00491
9460 2 0.0049
9620 2 0.00491
15000 2 0.00491
16200 2 0.00491
30700 2 0.00491
42700 2 0.00491
59500 2 0.00491
64600 2 0.00491
3 1 0.00031
13 1 0.000518
20 1 0.000759
47 1 0.000737
48 1 0.000725
52 1 0.00104
67 1 0.000793
70 1 0.00137
71 1 0.000749
73 1 0.001
74 1 0.00137
81 1 0.00129
99 1 0.00108
111 1 0.00169
121 1 0.00149
123 1 0.00102
144 1 0.00165
194 1 0.00199
252 1 0.00206
278 1 0.00219
804 1 0.00242
1400 1 0.00243
2070 1 0.00243
2450 1 0.00244
3020 1 0.00244
5910 1 0.00245
7340 1 0.00245
7840 1 0.00246
7920 1 0.00245
7990 1 0.00245
8620 1 0.00245
9300 1 0.00245
9660 1 0.00245
13800 1 0.00245
18300 1 0.00245
19000 1 0.00245
31400 1 0.00246
32800 1 0.00246
34600 1 0.00246
39400 1 0.00246
39700 1 0.00246
42500 1 0.00246
49500 1 0.00246
54000 1 0.00246
61200 1 0.00246
61500 1 0.00246
63800 1 0.00246
64700 1 0.00246
66500 1 0.00246

CL130 ----> CL119

image

No. of shared pairs: :142

CL130 ----> CL28

image

No. of shared pairs: :108

CL130 ----> CL62

image

No. of shared pairs: :65

CL130 ----> CL146

image

No. of shared pairs: :26