Cluster no. 129

Cluster no. 129

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Cluster is part of supercluster: 57

Cluster characteristics:

size	2571
size_real	2571
ecount	36211
supercluster	57
annotations_summary	2.72% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 0.08% organelle/plastid
pair_completeness	0.692560895325872
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00194476857253987
satellite_probability	1.94805139038498e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3
S5	0
S4	5
S7	3
S9	11
S6	11
S2	792
S1	907
S3	839

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0	0.0	0.0	0.0	0.5	7.5	6.0	2.0
S5	0.0	0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
S4	0.0	0	0.0	0.0	0.5	0.0	23.0	19.0	26.0
S7	0.0	0	0.0	0.0	0.5	0.0	0.5	0.5	0.5
S9	0.0	0	0.5	0.5	1.0	0.0	10.5	17.0	18.0
S6	0.5	0	0.0	0.0	0.0	1.0	36.5	42.0	36.5
S2	7.5	0	23.0	0.5	10.5	36.5	3690.0	3960.0	3670.0
S1	6.0	0	19.0	0.5	17.0	42.0	3960.0	4530.0	4180.0
S3	2.0	0	26.0	0.5	18.0	36.5	3670.0	4180.0	3870.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	NA	0.000	0.000	0.000	9.710	1.490	1.060	0.383
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	0.000	NA	0.000	0.000	5.560	0.000	1.070	0.787	1.160
S7	0.000	NA	0.000	0.000	191.000	0.000	0.794	0.710	0.767
S9	0.000	NA	5.560	191.000	16.000	0.000	0.702	1.020	1.160
S6	9.710	NA	0.000	0.000	0.000	2.670	0.995	1.020	0.961
S2	1.490	NA	1.070	0.794	0.702	0.995	1.030	0.987	0.987
S1	1.060	NA	0.787	0.710	1.020	1.020	0.987	1.010	1.010
S3	0.383	NA	1.160	0.767	1.160	0.961	0.987	1.010	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 2 0.00078

SIRE Ty1-GAG SIRE Ty1-GAG 70 0.02723

clusters with similarity:

Cluster	Number of similarity hits

177	10
232	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

177	34	0.0974
454	17	0.0687
249	13	0.0488
1150	9	0.037
467	7	0.0284
575	7	0.0283
46	5	0.00437
2750	5	0.021
3320	5	0.0211
6110	5	0.0212
23	4	0.00293
1640	4	0.0168
27	3	0.00272
42	3	0.00368
125	3	0.00417
4210	3	0.0127
7	2	0.0012
38	2	0.00159
96	2	0.00256
110	2	0.0023
113	2	0.00325
124	2	0.00439
131	2	0.00349
143	2	0.00307
175	2	0.00465
226	2	0.00676
229	2	0.00551
901	2	0.00826
2440	2	0.00839
5100	2	0.00849
5750	2	0.00847
14200	2	0.00851
38100	2	0.00853
62900	2	0.00853
65400	2	0.00853
30	1	0.000805
57	1	0.000969
58	1	0.00124
64	1	0.000945
98	1	0.00154
116	1	0.00174
127	1	0.00266
170	1	0.00257
174	1	0.00231
182	1	0.00246
189	1	0.00275
196	1	0.00257
228	1	0.00321
232	1	0.0028
305	1	0.00373
632	1	0.00409
638	1	0.00406
1210	1	0.00418
1600	1	0.00419
2280	1	0.00422
2670	1	0.00422
3890	1	0.00424
3890	1	0.00426
4420	1	0.00423
4890	1	0.00423
6480	1	0.00424
7300	1	0.00426
8600	1	0.00425
10900	1	0.00425
13800	1	0.00427
16100	1	0.00426
18100	1	0.00426
19000	1	0.00426
42600	1	0.00426
48100	1	0.00426
49900	1	0.00426
54400	1	0.00426
57000	1	0.00426
60800	1	0.00426
62400	1	0.00426
64400	1	0.00426
65400	1	0.00426

CL129 ----> CL177

No. of shared pairs: :34

CL129 ----> CL454

No. of shared pairs: :17

CL129 ----> CL249

No. of shared pairs: :13