Cluster no. 127

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Cluster is part of supercluster: 54

Cluster characteristics:

size	2597
size_real	2597
ecount	25269
supercluster	54
annotations_summary	15.33% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 7.82% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 6.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 5.54% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 0.54% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
pair_completeness	0.802220680083276
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000385059684251059
satellite_probability	2.63652108321905e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	6
S5	3
S4	10
S7	0
S9	2
S6	2
S2	818
S1	887
S3	869

comparative analysis - number of edges between species:

	S8	S5	S4	S9	S6	S2	S1	S3
S8	0.0	1	0.0	0.0	0.0	18.5	17.5	15.5
S5	1.0	0	0.0	0.0	0.0	5.0	14.0	8.0
S4	0.0	0	1.0	0.0	0.5	22.0	22.5	21.5
S7	0.0	0	0.0	0.0	0.0	0.0	0.0	0.0
S9	0.0	0	0.0	0.0	0.0	4.0	8.5	4.5
S6	0.0	0	0.5	0.0	0.0	3.0	5.0	5.5
S2	18.5	5	22.0	4.0	3.0	2720.0	2670.0	2810.0
S1	17.5	14	22.5	8.5	5.0	2670.0	2820.0	2840.0
S3	15.5	8	21.5	4.5	5.5	2810.0	2840.0	2730.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	17.200	0.000	NA	0.000	0.000	1.080	1.000	0.885
S5	17.200	0.000	0.000	NA	0.000	0.000	0.547	1.500	0.856
S4	0.000	0.000	5.550	NA	0.000	13.400	0.997	1.000	0.955
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	0.000	0.000	0.000	NA	0.000	0.000	0.720	1.500	0.793
S6	0.000	0.000	13.400	NA	0.000	0.000	0.656	1.070	1.180
S2	1.080	0.547	0.997	NA	0.720	0.656	1.010	0.974	1.020
S1	1.000	1.500	1.000	NA	1.500	1.070	0.974	1.010	1.010
S3	0.885	0.856	0.955	NA	0.793	1.180	1.020	1.010	0.970

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 0.00039

TatV Ty3-INT TatV Ty3-INT 398 0.15325

TatV Ty3-RH TatV Ty3-RH 203 0.07817

TatV Ty3-RT TatV Ty3-RT 144 0.05545

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 14 0.00539

TatV Ty3-aRH TatV Ty3-aRH 157 0.06045

clusters with similarity:

Cluster	Number of similarity hits

108

clusters connected through mates:

Cluster	Number of shared read pairs	k

108	45	0.0814
513	24	0.147
1380	8	0.0532
1430	6	0.0408
3990	6	0.0411
2620	5	0.034
4650	5	0.0344
2990	3	0.0204
5690	3	0.0208
6880	3	0.0208
9800	3	0.0208
10800	3	0.0208
12500	3	0.0208
15000	3	0.0208
16300	3	0.0208
17300	3	0.0208
168	2	0.00447
175	2	0.0059
3380	2	0.0137
3510	2	0.0137
6790	2	0.0139
12900	2	0.0139
13000	2	0.0139
13200	2	0.0139
15900	2	0.0139
17900	2	0.0139
24600	2	0.0139
26500	2	0.0139
53400	2	0.0139
60700	2	0.0139
63500	2	0.0139
7	1	0.000633
27	1	0.000987
42	1	0.00138
50	1	0.00284
129	1	0.00266
153	1	0.00184
188	1	0.00375
215	1	0.00606
6580	1	0.0069
7940	1	0.00692
14400	1	0.00694
14600	1	0.00694
15500	1	0.00694
16600	1	0.00694
18100	1	0.00694
18500	1	0.00694
18700	1	0.00694
24300	1	0.00697
25700	1	0.00697
34700	1	0.00697
37800	1	0.00697
43700	1	0.00697
59600	1	0.00697
60700	1	0.00697
63800	1	0.00697
65100	1	0.00697
68100	1	0.00697
68100	1	0.00697
70700	1	0.00697

CL127 ----> CL108

No. of shared pairs: :45

CL127 ----> CL513

No. of shared pairs: :24