Cluster no. 126

Cluster no. 126

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Cluster is part of supercluster: 55

Cluster characteristics:

size	2608
size_real	2608
ecount	14360
supercluster	55
annotations_summary	4.52% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 1.42% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 1.34% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 0.31% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.12% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.12% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
pair_completeness	0.521586931155193
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00153374233128834
satellite_probability	2.0897667525813e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	832
S4	909
S7	5
S9	0
S6	857
S2	4
S1	1
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0.0	0.0	0	0.0	0	0.0	0
S5	0	1780	1660.0	5.0	0	1590.0	8	2.0	0
S4	0	1660	1600.0	4.0	0	1470.0	6	2.5	0
S7	0	5	4.0	0.0	0	2.5	0	0.0	0
S9	0	0	0.0	0.0	0	0.0	0	0.0	0
S6	0	1590	1470.0	2.5	0	1470.0	5	4.0	0
S2	0	8	6.0	0.0	0	5.0	0	0.0	0
S1	0	2	2.5	0.0	0	4.0	0	0.0	0
S3	0	0	0.0	0.0	0	0.0	0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.000	0.998	1.240	NA	0.997	1.200	0.671	NA
S4	NA	0.998	1.020	1.050	NA	0.978	0.955	0.890	NA
S7	NA	1.240	1.050	0.000	NA	0.688	0.000	0.000	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	0.997	0.978	0.688	NA	1.030	0.833	1.490	NA
S2	NA	1.200	0.955	0.000	NA	0.833	0.000	0.000	NA
S1	NA	0.671	0.890	0.000	NA	1.490	0.000	0.000	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 8 0.00307

CRM Ty3-GAG CRM Ty3-GAG 3 0.00115

Reina Ty3-GAG Reina Ty3-GAG 1 0.00038

Tekay Ty3-GAG Tekay Ty3-GAG 118 0.04525

CRM Ty3-INT CRM Ty3-INT 1 0.00038

Galadriel Ty3-INT Galadriel Ty3-INT 1 0.00038

Reina Ty3-INT Reina Ty3-INT 3 0.00115

Tcn1 Ty3-INT Tcn1 Ty3-INT 1 0.00038

Tekay Ty3-INT Tekay Ty3-INT 37 0.01419

Tekay Ty3-PROT Tekay Ty3-PROT 35 0.01342

Tekay Ty3-RH Tekay Ty3-RH 1 0.00038

clusters with similarity:

Cluster	Number of similarity hits

99	3
3	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

99	72	0.0773
765	12	0.0282
95	7	0.00732
862	6	0.0142
3	5	0.00155
2800	5	0.0121
3250	4	0.00966
2	3	0.00153
6	3	0.000983
87	3	0.00291
90	3	0.00278
111	3	0.00505
117	3	0.00385
132	3	0.00566
2530	3	0.00725
3430	3	0.00725
5170	3	0.00728
6160	3	0.00727
6610	3	0.00729
10700	3	0.00728
13700	3	0.00729
15800	3	0.00729
19900	3	0.00729
1	2	0.00094
14	2	0.000992
43	2	0.0012
48	2	0.00145
80	2	0.00174
84	2	0.00173
89	2	0.00227
130	2	0.00245
135	2	0.00316
252	2	0.00408
4130	2	0.00484
6350	2	0.00485
7040	2	0.00485
11000	2	0.00485
20900	2	0.00487
24400	2	0.00487
24800	2	0.00487
42500	2	0.00487
52400	2	0.00487
53900	2	0.00487
69500	2	0.00487
15	1	0.000373
19	1	0.000472
28	1	0.000692
29	1	0.00069
31	1	0.000862
34	1	0.00063
37	1	0.000868
49	1	0.000513
60	1	0.000717
61	1	0.000802
67	1	0.00079
71	1	0.000747
73	1	0.000996
81	1	0.00128
86	1	0.0011
88	1	0.000942
105	1	0.00107
118	1	0.00116
120	1	0.00123
128	1	0.00097
141	1	0.00171
146	1	0.00107
186	1	0.00194
276	1	0.00219
368	1	0.00221
385	1	0.00232
603	1	0.00235
771	1	0.00241
994	1	0.0024
1420	1	0.0024
2280	1	0.00242
3760	1	0.00242
4680	1	0.00243
4940	1	0.00242
5200	1	0.00243
5370	1	0.00242
5930	1	0.00242
6620	1	0.00242
7620	1	0.00243
7720	1	0.00243
9970	1	0.00243
10200	1	0.00243
12500	1	0.00243
12600	1	0.00243
15600	1	0.00244
15700	1	0.00244
16800	1	0.00243
17000	1	0.00243
18400	1	0.00244
19300	1	0.00243
20900	1	0.00243
22300	1	0.00243
22800	1	0.00243
26600	1	0.00243
27700	1	0.00243
32100	1	0.00243
34200	1	0.00243
35000	1	0.00243
36300	1	0.00243
38400	1	0.00243
38700	1	0.00243
39700	1	0.00243
40400	1	0.00243
44900	1	0.00243
46100	1	0.00243
46100	1	0.00243
48600	1	0.00243
49900	1	0.00243
55200	1	0.00243
57700	1	0.00243
61700	1	0.00243
62900	1	0.00243
64100	1	0.00243
70500	1	0.00243

CL126 ----> CL99

No. of shared pairs: :72

CL126 ----> CL765

No. of shared pairs: :12