Cluster no. 125

Cluster no. 125

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Cluster is part of supercluster: 8

Cluster characteristics:

size	2638
size_real	2638
ecount	31112
supercluster	8
annotations_summary	0.04% organelle/plastid
pair_completeness	0.461495844875346
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.033737680060652
satellite_probability	3.2152786552126e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3
S5	5
S4	1
S7	7
S9	10
S6	4
S2	889
S1	860
S3	859

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.0	0.0	0.0	1.5	2.0	0	0.0	1.0	0.0
S5	0.0	0.0	0.0	0.5	0.0	0	18.0	25.5	21.5
S4	0.0	0.0	0.0	0.0	0.0	0	0.0	0.5	0.0
S7	1.5	0.5	0.0	1.0	3.0	0	18.5	16.0	13.5
S9	2.0	0.0	0.0	3.0	3.0	0	13.0	11.5	15.0
S6	0.0	0.0	0.0	0.0	0.0	1	38.0	29.0	29.0
S2	0.0	18.0	0.0	18.5	13.0	38	4100.0	3520.0	3640.0
S1	1.0	25.5	0.5	16.0	11.5	29	3520.0	2940.0	3040.0
S3	0.0	21.5	0.0	13.5	15.0	29	3640.0	3040.0	3130.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.000	0.00	192.000	291.000	0.00	0.000	0.721	0.000
S5	0.000	0.000	0.00	4.400	0.000	0.00	0.753	1.260	1.030
S4	0.000	0.000	0.00	0.000	0.000	0.00	0.000	3.250	0.000
S7	192.000	4.400	0.00	10.700	36.400	0.00	0.938	0.961	0.786
S9	291.000	0.000	0.00	36.400	41.400	0.00	0.750	0.786	0.993
S6	0.000	0.000	0.00	0.000	0.000	3.31	1.070	0.970	0.940
S2	0.000	0.753	0.00	0.938	0.750	1.07	0.989	1.010	1.010
S1	0.721	1.260	3.25	0.961	0.786	0.97	1.010	0.994	0.997
S3	0.000	1.030	0.00	0.786	0.993	0.94	1.010	0.997	0.995

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00038

clusters with similarity:

Cluster	Number of similarity hits

7	330
110	34
170	8
148	4
235	3
96	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

7	318	0.165
148	42	0.049
170	27	0.0421
110	9	0.00803
23	6	0.00371
5610	5	0.0102
42	4	0.00375
6720	4	0.00819
7010	4	0.00819
30	3	0.00201
46	3	0.00215
85	3	0.00302
129	3	0.00417
2350	3	0.00611
4270	3	0.00613
6050	3	0.00614
7120	3	0.00614
8990	3	0.00615
19400	3	0.00615
38	2	0.00132
58	2	0.00189
168	2	0.00253
210	2	0.00288
235	2	0.00351
290	2	0.00386
451	2	0.00396
2270	2	0.00408
2440	2	0.00408
4160	2	0.00409
5530	2	0.00409
12100	2	0.0041
13300	2	0.0041
14900	2	0.0041
17800	2	0.0041
31500	2	0.00411
50200	2	0.00411
55000	2	0.00411
68900	2	0.00411
27	1	0.000737
57	1	0.000778
64	1	0.000763
96	1	0.000968
100	1	0.00109
113	1	0.00115
131	1	0.00121
137	1	0.00161
143	1	0.00111
152	1	0.00118
156	1	0.00191
174	1	0.00146
182	1	0.00152
188	1	0.00164
189	1	0.00162
196	1	0.00156
286	1	0.00189
300	1	0.00196
489	1	0.002
540	1	0.00202
638	1	0.002
697	1	0.00201
998	1	0.00204
1230	1	0.00203
1280	1	0.00202
1860	1	0.00204
2250	1	0.00204
2360	1	0.00204
2560	1	0.00204
2950	1	0.00204
3030	1	0.00204
3420	1	0.00204
3550	1	0.00204
4220	1	0.00205
4320	1	0.00205
4570	1	0.00205
4740	1	0.00204
5240	1	0.00204
5260	1	0.00204
5300	1	0.00204
5430	1	0.00205
5490	1	0.00205
6930	1	0.00205
9370	1	0.00205
9540	1	0.00205
9980	1	0.00205
11800	1	0.00206
12200	1	0.00205
13000	1	0.00206
17400	1	0.00206
19100	1	0.00205
19200	1	0.00205
19700	1	0.00206
21700	1	0.00205
26700	1	0.00205
26700	1	0.00205
27600	1	0.00205
28800	1	0.00205
36500	1	0.00205
36600	1	0.00205
39100	1	0.00205
42000	1	0.00205
45700	1	0.00205
46100	1	0.00205
47000	1	0.00205
49700	1	0.00205
53200	1	0.00205
54900	1	0.00205
55700	1	0.00205
57600	1	0.00205
59700	1	0.00205
70700	1	0.00205

CL125 ----> CL7

No. of shared pairs: :318

CL125 ----> CL148

No. of shared pairs: :42

CL125 ----> CL170

No. of shared pairs: :27