Cluster no. 124

Cluster no. 124

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Cluster is part of supercluster: 53

Cluster characteristics:

size	2648
size_real	2648
ecount	32915
supercluster	53
annotations_summary	5.44% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness	0.71280724450194
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00113293051359517
satellite_probability	1.39099901770407e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	146
S5	11
S4	2
S7	147
S9	190
S6	9
S2	687
S1	705
S3	751

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	98.0	0.5	0.0	145.0	172.0	0.0	18.5	30.5	29.0
S5	0.5	0.0	0.0	0.0	0.5	0.5	27.0	45.0	44.0
S4	0.0	0.0	1.0	0.0	0.0	0.5	9.0	12.5	17.5
S7	145.0	0.0	0.0	188.0	219.0	0.0	32.0	54.5	42.0
S9	172.0	0.5	0.0	219.0	289.0	0.0	43.0	62.5	56.5
S6	0.0	0.5	0.5	0.0	0.0	0.0	26.0	32.0	32.0
S2	18.5	27.0	9.0	32.0	43.0	26.0	3070.0	3220.0	3210.0
S1	30.5	45.0	12.5	54.5	62.5	32.0	3220.0	3540.0	3550.0
S3	29.0	44.0	17.5	42.0	56.5	32.0	3210.0	3550.0	3480.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	13.200	0.284	0.000	14.200	13.600	0.000	0.128	0.193	0.185
S5	0.284	0.000	0.000	0.000	0.166	1.540	0.783	1.200	1.180
S4	0.000	0.000	20.100	0.000	0.000	4.470	0.758	0.964	1.360
S7	14.200	0.000	0.000	13.400	12.600	0.000	0.160	0.250	0.194
S9	13.600	0.166	0.000	12.600	13.400	0.000	0.174	0.232	0.211
S6	0.000	1.540	4.470	0.000	0.000	0.000	0.974	1.100	1.110
S2	0.128	0.783	0.758	0.160	0.174	0.974	1.090	1.040	1.050
S1	0.193	1.200	0.964	0.250	0.232	1.100	1.040	1.050	1.060
S3	0.185	1.180	1.360	0.194	0.211	1.110	1.050	1.060	1.050

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-GAG CRM Ty3-GAG 1 0.00038

Tekay Ty3-GAG Tekay Ty3-GAG 144 0.05438

clusters with similarity:

Cluster	Number of similarity hits

21	33
32	7

clusters connected through mates:

Cluster	Number of shared read pairs	k

21	42	0.06
32	30	0.0369
50	6	0.0139
316	4	0.0161
816	3	0.013
7300	3	0.0134
15500	3	0.0134
23	2	0.00148
30	2	0.00162
46	2	0.00177
57	2	0.00196
129	2	0.00439
226	2	0.00703
10800	2	0.00893
25900	2	0.00897
33100	2	0.00897
55000	2	0.00897
5	1	0.00048
11	1	0.000684
12	1	0.000708
17	1	0.000544
27	1	0.000915
38	1	8e-04
42	1	0.00124
54	1	0.000946
75	1	0.00121
85	1	0.00137
91	1	0.00114
106	1	0.0016
108	1	0.00158
110	1	0.00117
113	1	0.00166
174	1	0.00238
177	1	0.00296
182	1	0.00253
193	1	0.00355
221	1	0.00303
287	1	0.00359
613	1	0.00447
934	1	0.00442
1280	1	0.00434
2020	1	0.00441
2180	1	0.00442
3110	1	0.00444
4870	1	0.00444
5530	1	0.00449
7190	1	0.00445
8940	1	0.00446
9430	1	0.00448
9860	1	0.00448
10200	1	0.00446
11500	1	0.00447
15100	1	0.00449
15600	1	0.00447
16600	1	0.00447
16800	1	0.00449
18400	1	0.00447
18500	1	0.00449
19100	1	0.00449
20500	1	0.00448
23000	1	0.00448
23300	1	0.00448
27200	1	0.00448
30800	1	0.00448
37400	1	0.00448
43600	1	0.00448
49900	1	0.00448
57000	1	0.00448
59700	1	0.00448
59900	1	0.00448
60800	1	0.00448
62500	1	0.00448
68000	1	0.00448

CL124 ----> CL21

No. of shared pairs: :42

CL124 ----> CL32

No. of shared pairs: :30