Cluster no. 123

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Cluster is part of supercluster: 52

Cluster characteristics:

size 2658
size_real 2658
ecount 12340
supercluster 52
annotations_summary
pair_completeness 0.398211467648606
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00112866817155756
satellite_probability 6.52979343237575e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 852
S4 899
S7 2
S9 2
S6 897
S2 2
S1 4
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0 0.0 0.0 0.0 0.0 0.0 0
S5 0 1200.0 1390 7.5 1.0 1150.0 2.0 5.0 0
S4 0 1390.0 1840 9.0 1.0 1430.0 0.0 5.0 0
S7 0 7.5 9 0.0 0.0 9.5 0.0 0.0 0
S9 0 1.0 1 0.0 0.0 1.5 0.0 0.0 0
S6 0 1150.0 1430 9.5 1.5 1270.0 1.5 4.5 0
S2 0 2.0 0 0.0 0.0 1.5 1.0 0.0 0
S1 0 5.0 5 0.0 0.0 4.5 0.0 0.0 0
S3 0 0.0 0 0.0 0.0 0.0 0.0 0.0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.050 0.977 0.950 0.941 0.976 1.46 1.140 NA
S4 NA 0.977 1.040 0.913 0.754 0.978 0.00 0.910 NA
S7 NA 0.950 0.913 0.000 0.000 1.170 0.00 0.000 NA
S9 NA 0.941 0.754 0.000 0.000 1.370 0.00 0.000 NA
S6 NA 0.976 0.978 1.170 1.370 1.050 1.06 0.991 NA
S2 NA 1.460 0.000 0.000 0.000 1.060 609.00 0.000 NA
S1 NA 1.140 0.910 0.000 0.000 0.991 0.00 0.000 NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
105 10
92 3

clusters connected through mates:

Cluster Number of shared
read pairs
k
92 69 0.0673
105 57 0.052
392 15 0.0249
1300 7 0.0121
1760 7 0.0121
1720 6 0.0104
1 5 0.00218
14 5 0.0023
5300 5 0.0087
3 4 0.00118
87 4 0.00335
99 4 0.00366
3000 4 0.00695
3090 4 0.00694
3210 4 0.00694
4540 4 0.00696
7430 4 0.00697
43 3 0.00164
56 3 0.00251
61 3 0.00213
86 3 0.0028
774 3 0.00513
1070 3 0.00517
1800 3 0.00521
2370 3 0.00521
2600 3 0.00521
9610 3 0.00523
9960 3 0.00523
6 2 0.000622
28 2 0.00124
34 2 0.00114
37 2 0.00152
48 2 0.00129
90 2 0.00161
117 2 0.00213
242 2 0.0029
952 2 0.00344
2260 2 0.00347
4130 2 0.00348
9480 2 0.00348
10100 2 0.00348
10700 2 0.00348
11200 2 0.00349
11300 2 0.00349
12500 2 0.00349
12600 2 0.00349
13100 2 0.00349
13400 2 0.00349
13700 2 0.00349
14300 2 0.00349
17300 2 0.00349
17300 2 0.00349
21100 2 0.00349
29500 2 0.00349
39800 2 0.00349
43800 2 0.00349
51900 2 0.00349
54900 2 0.00349
55000 2 0.00349
57200 2 0.00349
58800 2 0.00349
63700 2 0.00349
64700 2 0.00349
65000 2 0.00349
69300 2 0.00349
70400 2 0.00349
70500 2 0.00349
15 1 0.000352
19 1 0.000438
24 1 0.00084
29 1 0.000621
31 1 0.000757
33 1 0.000429
39 1 0.000653
60 1 0.000643
80 1 0.000762
84 1 0.000759
88 1 0.000817
95 1 0.000894
109 1 0.000967
115 1 0.000787
120 1 0.00103
130 1 0.00102
132 1 0.00145
135 1 0.00126
146 1 0.000915
257 1 0.00161
603 1 0.0017
659 1 0.0017
666 1 0.0017
896 1 0.00172
1530 1 0.00173
1660 1 0.00174
1800 1 0.00173
2310 1 0.00174
2710 1 0.00174
3090 1 0.00174
3890 1 0.00174
4430 1 0.00174
4480 1 0.00174
5010 1 0.00174
5080 1 0.00174
6920 1 0.00174
8610 1 0.00174
10100 1 0.00174
10600 1 0.00174
11200 1 0.00174
11300 1 0.00175
13300 1 0.00175
14500 1 0.00174
15200 1 0.00175
15500 1 0.00174
15600 1 0.00174
16000 1 0.00174
18100 1 0.00174
18300 1 0.00174
18400 1 0.00174
18500 1 0.00174
18700 1 0.00174
19900 1 0.00175
20400 1 0.00175
22100 1 0.00175
22700 1 0.00175
25100 1 0.00175
25600 1 0.00175
25900 1 0.00175
27200 1 0.00175
28100 1 0.00175
29600 1 0.00175
30500 1 0.00175
32000 1 0.00175
38600 1 0.00175
39400 1 0.00175
40100 1 0.00175
40700 1 0.00175
41000 1 0.00175
43100 1 0.00175
43800 1 0.00175
45000 1 0.00175
45800 1 0.00175
46800 1 0.00175
49100 1 0.00175
51000 1 0.00175
52800 1 0.00175
53200 1 0.00175
53800 1 0.00175
55500 1 0.00175
56600 1 0.00175
58700 1 0.00175
59300 1 0.00175
60800 1 0.00175
60900 1 0.00175
60900 1 0.00175
63000 1 0.00175
64800 1 0.00175
64800 1 0.00175
65200 1 0.00175
67000 1 0.00175
69100 1 0.00175
69700 1 0.00175
70500 1 0.00175

CL123 ----> CL92

image

No. of shared pairs: :69

CL123 ----> CL105

image

No. of shared pairs: :57

CL123 ----> CL392

image

No. of shared pairs: :15