Cluster no. 122

Cluster no. 122

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Cluster is part of supercluster: 6

Cluster characteristics:

size	2664
size_real	2664
ecount	35763
supercluster	6
annotations_summary
pair_completeness	0.745740498034076
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.141516516516517
satellite_probability	6.18261970592474e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	891
S4	903
S7	0
S9	4
S6	860
S2	2
S1	2
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0.0	0.0	0	0.0	0.0	0.0	0.0	0.0
S5	0	4300.0	4050.0	0	2.5	3880.0	1.0	25.5	0.5
S4	0	4050.0	4100.0	0	6.5	3830.0	3.0	33.5	0.0
S7	0	0.0	0.0	0	0.0	0.0	0.0	0.0	0.0
S9	0	2.5	6.5	0	2.0	4.5	0.0	0.0	0.0
S6	0	3880.0	3830.0	0	4.5	3620.0	2.5	25.0	1.0
S2	0	1.0	3.0	0	0.0	2.5	0.0	0.0	0.0
S1	0	25.5	33.5	0	0.0	25.0	0.0	0.0	0.0
S3	0	0.5	0.0	0	0.0	1.0	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.020	0.983	NA	0.470	0.997	0.449	0.885	0.972
S4	NA	0.983	1.010	NA	1.250	1.000	1.370	1.190	0.000
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	0.470	1.250	NA	298.000	0.913	0.000	0.000	0.000
S6	NA	0.997	1.000	NA	0.913	1.000	1.210	0.936	2.100
S2	NA	0.449	1.370	NA	0.000	1.210	0.000	0.000	0.000
S1	NA	0.885	1.190	NA	0.000	0.936	0.000	0.000	0.000
S3	NA	0.972	0.000	NA	0.000	2.100	0.000	0.000	0.000

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

16	30
81	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

16	92	0.13
81	44	0.0782
5000	6	0.0305
916	5	0.0248
4040	5	0.0253
3210	3	0.0153
3820	3	0.0153
7720	3	0.0153
8610	3	0.0153
14400	3	0.0153
14800	3	0.0153
19400	3	0.0153
61	2	0.00194
6200	2	0.0102
19800	2	0.0102
23600	2	0.0103
24100	2	0.0103
26700	2	0.0103
38900	2	0.0103
50400	2	0.0103
54600	2	0.0103
58500	2	0.0103
58700	2	0.0103
59800	2	0.0103
67800	2	0.0103
70500	2	0.0103
3	1	0.000332
37	1	0.00107
52	1	0.00134
56	1	0.00123
66	1	0.00101
82	1	0.00121
83	1	0.00176
84	1	0.00106
86	1	0.00144
89	1	0.0015
90	1	0.00116
117	1	0.00178
120	1	0.00168
132	1	0.00318
142	1	0.00261
313	1	0.0048
1450	1	0.00499
2180	1	0.00504
5650	1	0.00512
7490	1	0.0051
8330	1	0.0051
14200	1	0.00514
15200	1	0.00512
18400	1	0.00512
19400	1	0.00512
21500	1	0.00513
22600	1	0.00513
28200	1	0.00513
29200	1	0.00513
36800	1	0.00513
37800	1	0.00513
40800	1	0.00513
41800	1	0.00513
49600	1	0.00513
51400	1	0.00513
62800	1	0.00513

CL122 ----> CL16

No. of shared pairs: :92

CL122 ----> CL81

No. of shared pairs: :44