Cluster no. 121

Cluster no. 121

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Cluster is part of supercluster: 51

Cluster characteristics:

size	2732
size_real	2732
ecount	14342
supercluster	51
annotations_summary	22.18% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 17.20% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 12.81% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 4.61% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 0.99% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.66% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT 0.59% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.33% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.22% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.11% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT 0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH 0.04% Class_I/pararetrovirus:PARA-RT
pair_completeness	0.672994488671157
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000366032210834553
satellite_probability	2.69560262167269e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2
S5	923
S4	902
S7	5
S9	0
S6	898
S2	0
S1	0
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.0	4.5	1.0	0	0	4	0	0	0.0
S5	4.5	1800.0	1600.0	21	0	1600	0	0	4.0
S4	1.0	1600.0	1500.0	14	0	1500	0	0	2.5
S7	0.0	21.0	14.0	0	0	16	0	0	0.0
S9	0.0	0.0	0.0	0	0	0	0	0	0.0
S6	4.0	1600.0	1500.0	16	0	1510	0	0	2.0
S2	0.0	0.0	0.0	0	0	0	0	0	0.0
S1	0.0	0.0	0.0	0	0	0	0	0	0.0
S3	0.0	4.0	2.5	0	0	2	0	0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	130.000	1.220	0.296	0.000	NA	1.180	NA	NA	0.000
S5	1.220	1.020	0.987	1.170	NA	0.984	NA	NA	1.340
S4	0.296	0.987	1.010	0.853	NA	1.010	NA	NA	0.914
S7	0.000	1.170	0.853	0.000	NA	0.972	NA	NA	0.000
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	1.180	0.984	1.010	0.972	NA	1.010	NA	NA	0.729
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	0.000	1.340	0.914	0.000	NA	0.729	NA	NA	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

pararetrovirus PARA-RT pararetrovirus PARA-RT 1 0.00037

CRM Ty3-GAG CRM Ty3-GAG 4 0.00146

Tekay Ty3-GAG Tekay Ty3-GAG 27 0.00988

CRM Ty3-INT CRM Ty3-INT 1 0.00037

Reina Ty3-INT Reina Ty3-INT 9 0.00329

Tekay Ty3-INT Tekay Ty3-INT 606 0.22182

Tekay Ty3-PROT Tekay Ty3-PROT 126 0.04612

Athila Ty3-RH Athila Ty3-RH 2 0.00073

CRM Ty3-RH CRM Ty3-RH 1 0.00037

Reina Ty3-RH Reina Ty3-RH 4 0.00146

TatV Ty3-RH TatV Ty3-RH 1 0.00037

Tekay Ty3-RH Tekay Ty3-RH 470 0.17204

CRM Ty3-RT CRM Ty3-RT 4 0.00146

Chlamyvir Ty3-RT Chlamyvir Ty3-RT 18 0.00659

Galadriel Ty3-RT Galadriel Ty3-RT 6 0.00220

Reina Ty3-RT Reina Ty3-RT 16 0.00586

Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00037

Tekay Ty3-RT Tekay Ty3-RT 350 0.12811

chromo-unclass Ty3-RT chromo-unclass Ty3-RT 3 0.00110

clusters with similarity:

Cluster	Number of similarity hits

14	67
56	26
155	8
3	2
165	2
39	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

14	95	0.0507
3	20	0.00648
56	19	0.0214
155	9	0.0195
553	8	0.0286
355	7	0.0246
1040	7	0.0255
1040	7	0.0257
328	6	0.0207
3540	6	0.0222
165	4	0.0101
371	4	0.0141
5300	4	0.0149
7280	4	0.0148
10600	4	0.0149
39	3	0.00245
5260	3	0.0112
5610	3	0.0111
13400	3	0.0112
117	2	0.00315
5140	2	0.00743
6400	2	0.00742
7540	2	0.00743
8900	2	0.00743
13400	2	0.00745
20100	2	0.00746
23100	2	0.00746
26100	2	0.00746
44700	2	0.00746
47400	2	0.00746
57000	2	0.00746
69100	2	0.00746
15	1	0.000394
16	1	0.00128
24	1	0.00113
25	1	0.000979
29	1	0.000766
48	1	0.000806
81	1	0.00157
84	1	0.000988
86	1	0.0013
87	1	0.00113
130	1	0.00149
135	1	0.00204
145	1	0.00253
1120	1	0.00364
8400	1	0.00372
9230	1	0.00372
11000	1	0.00372
11100	1	0.00372
11900	1	0.00374
13200	1	0.00372
14700	1	0.00374
15800	1	0.00372
16400	1	0.00374
16700	1	0.00372
16800	1	0.00372
17300	1	0.00372
18200	1	0.00372
23300	1	0.00373
25400	1	0.00373
32500	1	0.00373
35700	1	0.00373
36300	1	0.00373
39300	1	0.00373
41000	1	0.00373
42600	1	0.00373
45700	1	0.00373
51500	1	0.00373
52100	1	0.00373
52900	1	0.00373
53100	1	0.00373
53700	1	0.00373
54100	1	0.00373
57600	1	0.00373
62700	1	0.00373
62700	1	0.00373

CL121 ----> CL14

No. of shared pairs: :95

CL121 ----> CL3

No. of shared pairs: :20

CL121 ----> CL56

No. of shared pairs: :19