Cluster no. 120

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Cluster is part of supercluster: 6

Cluster characteristics:

size 2742
size_real 2742
ecount 22237
supercluster 6
annotations_summary
pair_completeness 0.547404063205418
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0762217359591539
satellite_probability 7.48138912879418e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2
S5 875
S4 904
S7 0
S9 0
S6 950
S2 7
S1 0
S3 4
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 4.5 6.0 0 0 6.5 0.0 0 0.0
S5 4.5 2390.0 2380.0 0 0 2490.0 13.0 0 4.5
S4 6.0 2380.0 2390.0 0 0 2500.0 21.5 0 4.5
S7 0.0 0.0 0.0 0 0 0.0 0.0 0 0.0
S9 0.0 0.0 0.0 0 0 0.0 0.0 0 0.0
S6 6.5 2490.0 2500.0 0 0 2580.0 11.5 0 7.0
S2 0.0 13.0 21.5 0 0 11.5 0.0 0 0.0
S1 0.0 0.0 0.0 0 0 0.0 0.0 0 0.0
S3 0.0 4.5 4.5 0 0 7.0 0.0 0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.809 1.080 NA NA 1.120 0.000 NA 0.000
S5 0.809 1.000 0.996 NA NA 1.000 0.864 NA 0.860
S4 1.080 0.996 0.998 NA NA 1.000 1.420 NA 0.857
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 1.120 1.000 1.000 NA NA 0.996 0.733 NA 1.280
S2 0.000 0.864 1.420 NA NA 0.733 0.000 NA 0.000
S1 NA NA NA NA NA NA NA NA NA
S3 0.000 0.860 0.857 NA NA 1.280 0.000 NA 0.000

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
16 14
94 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
16 159 0.174
94 29 0.0392
486 8 0.0194
1270 6 0.0148
1910 6 0.0148
14 5 0.00249
1810 5 0.0123
4140 5 0.0124
61 4 0.00323
2090 4 0.00991
4220 4 0.00989
8780 4 0.00993
2000 3 0.00741
2550 3 0.00739
4880 3 0.00743
6940 3 0.00743
9720 3 0.00744
17000 3 0.00745
3 2 0.000621
86 2 0.00222
500 2 0.0048
1310 2 0.00493
1790 2 0.00492
3240 2 0.00494
4070 2 0.00494
4250 2 0.00496
4600 2 0.00495
6110 2 0.00497
10200 2 0.00496
10500 2 0.00498
12500 2 0.00497
16300 2 0.00497
18700 2 0.00497
22800 2 0.00498
24600 2 0.00498
35400 2 0.00498
39200 2 0.00498
45300 2 0.00498
46300 2 0.00498
49200 2 0.00498
51500 2 0.00498
60300 2 0.00498
66700 2 0.00498
68200 2 0.00498
69000 2 0.00498
1 1 0.000472
6 1 0.000329
34 1 0.000634
39 1 0.000736
43 1 0.000603
52 1 0.00105
74 1 0.00137
80 1 0.000876
87 1 0.000978
90 1 0.000933
117 1 0.0013
122 1 0.00168
123 1 0.00103
126 1 0.00123
181 1 0.00129
252 1 0.00208
350 1 0.00239
676 1 0.00244
750 1 0.00243
1040 1 0.00245
1280 1 0.00247
2590 1 0.00248
4370 1 0.00248
4850 1 0.00248
5450 1 0.00248
6350 1 0.00248
9820 1 0.00249
11800 1 0.00248
11800 1 0.00249
13200 1 0.00249
14900 1 0.00248
15600 1 0.00248
15700 1 0.00248
15800 1 0.00248
16300 1 0.00248
18000 1 0.00248
20700 1 0.00249
21200 1 0.00249
21500 1 0.00249
23000 1 0.00249
23600 1 0.00249
24100 1 0.00249
25900 1 0.00249
29600 1 0.00249
30300 1 0.00249
31100 1 0.00249
32700 1 0.00249
36400 1 0.00249
36800 1 0.00249
44600 1 0.00249
46500 1 0.00249
50800 1 0.00249
50900 1 0.00249
53100 1 0.00249
53500 1 0.00249
57300 1 0.00249
58100 1 0.00249
60000 1 0.00249
63200 1 0.00249
65200 1 0.00249

CL120 ----> CL16

image

No. of shared pairs: :159

CL120 ----> CL94

image

No. of shared pairs: :29