Cluster no. 119

Cluster no. 119

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Cluster is part of supercluster: 23

Cluster characteristics:

size	2767
size_real	2767
ecount	59627
supercluster	23
annotations_summary	0.04% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
pair_completeness	0.652927120669056
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00108420672208168
satellite_probability	3.68527499034017e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2
S5	905
S4	932
S7	0
S9	2
S6	923
S2	2
S1	1
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	12.0	14.0	0	0.0	12	0.0	0.0	0
S5	12	6250.0	6720.0	0	5.0	6330	6.5	1.0	0
S4	14	6720.0	7290.0	0	2.5	6760	4.5	2.5	0
S7	0	0.0	0.0	0	0.0	0	0.0	0.0	0
S9	0	5.0	2.5	0	1.0	6	0.0	0.0	0
S6	12	6330.0	6760.0	0	6.0	6320	8.0	1.0	0
S2	0	6.5	4.5	0	0.0	8	0.0	0.0	0
S1	0	1.0	2.5	0	0.0	1	0.0	0.0	0
S3	0	0.0	0.0	0	0.0	0	0.0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.000	0.974	1.060	NA	0.000	0.969	0.000	0.000	NA
S5	0.974	0.998	0.997	NA	1.060	1.010	1.060	0.686	NA
S4	1.060	0.997	1.010	NA	0.495	0.997	0.679	1.590	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	0.000	1.060	0.495	NA	284.000	1.270	0.000	0.000	NA
S6	0.969	1.010	0.997	NA	1.270	0.998	1.290	0.682	NA
S2	0.000	1.060	0.679	NA	0.000	1.290	0.000	0.000	NA
S1	0.000	0.686	1.590	NA	0.000	0.682	0.000	0.000	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-PROT SIRE Ty1-PROT 1 0.00036

clusters with similarity:

Cluster	Number of similarity hits

28	93
130	75
60	11
62	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

130	142	0.204
28	76	0.0573
62	34	0.048
60	19	0.0149
2	3	0.00163
3	3	0.000964
2700	3	0.0102
10800	3	0.0103
11600	3	0.0103
14	2	0.00105
29	2	0.0015
48	2	0.00158
6680	2	0.00683
17900	2	0.00685
18500	2	0.00685
34500	2	0.00686
37500	2	0.00686
48700	2	0.00686
1	1	0.000498
6	1	0.000341
20	1	0.000832
25	1	0.000957
26	1	0.000822
41	1	0.00114
71	1	0.00082
80	1	0.00097
86	1	0.00126
89	1	0.00131
95	1	0.00119
100	1	0.00139
115	1	0.00101
363	1	0.00324
1310	1	0.00339
1760	1	0.00344
2030	1	0.00337
2890	1	0.0034
3220	1	0.00341
3280	1	0.0034
4250	1	0.00341
4360	1	0.00341
4800	1	0.00342
6690	1	0.00342
7910	1	0.00343
8560	1	0.00342
9920	1	0.00343
10800	1	0.00343
12800	1	0.00342
13100	1	0.00344
13700	1	0.00342
14800	1	0.00342
15000	1	0.00342
16000	1	0.00344
16500	1	0.00342
16900	1	0.00342
18500	1	0.00342
18600	1	0.00342
18800	1	0.00342
18900	1	0.00342
19200	1	0.00342
19200	1	0.00342
24600	1	0.00343
31200	1	0.00343
34400	1	0.00343
37700	1	0.00343
39700	1	0.00343
40300	1	0.00343
40300	1	0.00343
45900	1	0.00343
49300	1	0.00343
55100	1	0.00343
63100	1	0.00343
67200	1	0.00343
67400	1	0.00343
68800	1	0.00343

CL119 ----> CL130

No. of shared pairs: :142

CL119 ----> CL28

No. of shared pairs: :76

CL119 ----> CL62

No. of shared pairs: :34

CL119 ----> CL60

No. of shared pairs: :19