Cluster no. 118

Cluster no. 118

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Cluster is part of supercluster: 4

Cluster characteristics:

size	2795
size_real	2795
ecount	136277
supercluster	4
annotations_summary
pair_completeness	0.513264753654575
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.646869409660107
satellite_probability	0.00542537316791691
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	971
S4	910
S7	2
S9	2
S6	902
S2	2
S1	2
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0.0	0.0	0.0	0.0	0.0	0	0.0	0.0
S5	0	17300.0	16000.0	65.5	26.0	15000.0	12	44.5	68.0
S4	0	16000.0	14600.0	58.5	32.5	13900.0	12	36.0	60.0
S7	0	65.5	58.5	0.0	0.0	59.0	0	0.5	1.0
S9	0	26.0	32.5	0.0	0.0	26.0	0	0.0	0.0
S6	0	15000.0	13900.0	59.0	26.0	13300.0	16	44.5	52.5
S2	0	12.0	12.0	0.0	0.0	16.0	1	0.0	0.0
S1	0	44.5	36.0	0.5	0.0	44.5	0	0.0	0.0
S3	0	68.0	60.0	1.0	0.0	52.5	0	0.0	2.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.000	1.000	0.997	0.865	0.995	0.822	0.996	1.040
S4	NA	1.000	0.994	0.966	1.170	1.000	0.892	0.874	0.996
S7	NA	0.997	0.966	0.000	0.000	1.030	0.000	2.940	4.030
S9	NA	0.865	1.170	0.000	0.000	0.988	0.000	0.000	0.000
S6	NA	0.995	1.000	1.030	0.988	1.000	1.250	1.140	0.919
S2	NA	0.822	0.892	0.000	0.000	1.250	81.100	0.000	0.000
S1	NA	0.996	0.874	2.940	0.000	1.140	0.000	0.000	0.000
S3	NA	1.040	0.996	4.030	0.000	0.919	0.000	0.000	8.090

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

1	2250
76	1060
93	4

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	413	0.19
76	393	0.397
35	4	0.0028
29	2	0.00134
48	2	0.0014
151	2	0.00228
43500	2	0.00444
3	1	0.000306
6	1	0.000323
13	1	0.000507
14	1	0.000486
47	1	0.000714
49	1	0.000503
55	1	0.000857
81	1	0.00122
84	1	0.000837
86	1	0.00105
90	1	0.000893
93	1	0.000905
95	1	0.001
126	1	0.00116
132	1	0.00176
156	1	0.00205
201	1	0.00211
1610	1	0.0022
6080	1	0.00221
22200	1	0.00222
24100	1	0.00222
37200	1	0.00222
52200	1	0.00222

CL118 ----> CL1

No. of shared pairs: :413

CL118 ----> CL76

No. of shared pairs: :393