Cluster no. 115

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Cluster is part of supercluster: 4

Cluster characteristics:

size 2920
size_real 2920
ecount 90542
supercluster 4
annotations_summary
pair_completeness 0.353104726598703
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0277397260273973
satellite_probability 5.21895003093699e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2
S5 946
S4 970
S7 2
S9 2
S6 996
S2 1
S1 0
S3 1
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 30.0 35.0 0.0 0.0 29.5 0 0 0.0
S5 30.0 8680.0 9480.0 8.5 0.5 9700.0 7 0 37.0
S4 35.0 9480.0 10700.0 7.5 0.0 10700.0 5 0 43.0
S7 0.0 8.5 7.5 0.0 0.0 11.0 0 0 0.0
S9 0.0 0.5 0.0 0.0 0.0 1.0 0 0 0.0
S6 29.5 9700.0 10700.0 11.0 1.0 11000.0 7 0 44.5
S2 0.0 7.0 5.0 0.0 0.0 7.0 0 0 0.0
S1 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0.0
S3 0.0 37.0 43.0 0.0 0.0 44.5 0 0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.00 1.030 1.080 0.000 0.00 0.900 0.00 NA 0.000
S5 1.03 1.010 0.994 1.020 1.08 1.000 1.19 NA 0.963
S4 1.08 0.994 1.010 0.813 0.00 0.993 0.77 NA 1.010
S7 0.00 1.020 0.813 0.000 0.00 1.170 0.00 NA 0.000
S9 0.00 1.080 0.000 0.000 0.00 1.920 0.00 NA 0.000
S6 0.90 1.000 0.993 1.170 1.92 1.010 1.06 NA 1.030
S2 0.00 1.190 0.770 0.000 0.00 1.060 0.00 NA 0.000
S1 NA NA NA NA NA NA NA NA NA
S3 0.00 0.963 1.010 0.000 0.00 1.030 0.00 NA 0.000

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
76 846
35 40

clusters connected through mates:

Cluster Number of shared
read pairs
k
76 467 0.377
35 134 0.08
567 9 0.0126
1250 7 0.00994
1630 6 0.00853
1040 5 0.00708
2150 5 0.00712
5390 4 0.00571
6030 4 0.00571
3 3 0.000853
72 3 0.00221
1020 3 0.00426
1950 3 0.00428
2270 3 0.00428
3450 3 0.00427
5300 3 0.00428
10000 3 0.00429
14900 3 0.00429
18300 3 0.00429
29 2 0.00115
34 2 0.00107
2020 2 0.00284
2390 2 0.00285
2600 2 0.00285
2820 2 0.00285
3480 2 0.00285
5180 2 0.00285
8920 2 0.00286
8950 2 0.00286
9270 2 0.00286
9320 2 0.00286
12000 2 0.00286
17400 2 0.00286
17700 2 0.00286
21600 2 0.00286
29300 2 0.00286
32800 2 0.00286
38800 2 0.00286
39600 2 0.00286
40300 2 0.00286
49000 2 0.00286
49400 2 0.00286
54200 2 0.00286
55700 2 0.00286
60600 2 0.00286
61100 2 0.00286
65400 2 0.00286
68600 2 0.00286
2 1 0.000446
14 1 0.000434
16 1 0.000826
37 1 0.000694
43 1 0.000511
48 1 0.000598
56 1 0.000758
61 1 0.000651
67 1 0.000644
84 1 0.000693
88 1 0.000741
119 1 0.00101
123 1 0.000787
145 1 0.00121
179 1 0.00104
596 1 0.00141
732 1 0.00141
1050 1 0.00142
1340 1 0.00142
1740 1 0.00142
2180 1 0.00143
2520 1 0.00142
3070 1 0.00143
3360 1 0.00143
3420 1 0.00143
3560 1 0.00143
4410 1 0.00143
4900 1 0.00143
5140 1 0.00143
5360 1 0.00143
5650 1 0.00143
5800 1 0.00143
7220 1 0.00143
8410 1 0.00143
8510 1 0.00143
9200 1 0.00143
9440 1 0.00143
9520 1 0.00143
9730 1 0.00143
10300 1 0.00143
10400 1 0.00143
10500 1 0.00143
11100 1 0.00143
11600 1 0.00143
11900 1 0.00143
12300 1 0.00143
12800 1 0.00143
13100 1 0.00143
13500 1 0.00143
13900 1 0.00143
14000 1 0.00143
14200 1 0.00143
14500 1 0.00143
14800 1 0.00143
14900 1 0.00143
15000 1 0.00143
15600 1 0.00143
16000 1 0.00143
16100 1 0.00143
16500 1 0.00143
17000 1 0.00143
17700 1 0.00143
17900 1 0.00143
18700 1 0.00143
19000 1 0.00143
19000 1 0.00143
19900 1 0.00143
21500 1 0.00143
21900 1 0.00143
22300 1 0.00143
23900 1 0.00143
24000 1 0.00143
24400 1 0.00143
25600 1 0.00143
26700 1 0.00143
27600 1 0.00143
29300 1 0.00143
29500 1 0.00143
33100 1 0.00143
35100 1 0.00143
35700 1 0.00143
35900 1 0.00143
36000 1 0.00143
37300 1 0.00143
38600 1 0.00143
39400 1 0.00143
41000 1 0.00143
41400 1 0.00143
42900 1 0.00143
43400 1 0.00143
43500 1 0.00143
43700 1 0.00143
43800 1 0.00143
46700 1 0.00143
47000 1 0.00143
48100 1 0.00143
48800 1 0.00143
49900 1 0.00143
50100 1 0.00143
51100 1 0.00143
51800 1 0.00143
53500 1 0.00143
54900 1 0.00143
56000 1 0.00143
56400 1 0.00143
57100 1 0.00143
57600 1 0.00143
58600 1 0.00143
61800 1 0.00143
62000 1 0.00143
62300 1 0.00143
62500 1 0.00143
63000 1 0.00143
63600 1 0.00143
64400 1 0.00143
64700 1 0.00143
65200 1 0.00143
65600 1 0.00143
65900 1 0.00143
66000 1 0.00143
67400 1 0.00143
67800 1 0.00143
68700 1 0.00143
69000 1 0.00143
69700 1 0.00143
69800 1 0.00143

CL115 ----> CL76

image

No. of shared pairs: :467

CL115 ----> CL35

image

No. of shared pairs: :134