Cluster no. 114

Cluster no. 114

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Cluster is part of supercluster: 49

Cluster characteristics:

size	2930
size_real	2930
ecount	19358
supercluster	49
annotations_summary	0.10% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 0.07% organelle/plastid
pair_completeness	0.616997792494481
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0143344709897611
satellite_probability	3.17876592687763e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	959
S5	6
S4	4
S7	972
S9	968
S6	8
S2	5
S1	4
S3	4

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1980.0	14.5	7.5	2030.0	2070.0	17.5	9.0	11.5	4.5
S5	14.5	0.0	0.0	15.0	12.0	0.0	0.0	0.0	0.0
S4	7.5	0.0	0.0	5.0	7.0	0.0	0.0	0.0	0.0
S7	2030.0	15.0	5.0	2160.0	2170.0	23.5	7.5	8.0	5.5
S9	2070.0	12.0	7.0	2170.0	2270.0	28.5	4.5	15.5	4.5
S6	17.5	0.0	0.0	23.5	28.5	0.0	0.0	0.0	0.0
S2	9.0	0.0	0.0	7.5	4.5	0.0	1.0	0.0	0.0
S1	11.5	0.0	0.0	8.0	15.5	0.0	0.0	1.0	0.0
S3	4.5	0.0	0.0	5.5	4.5	0.0	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.020	1.10	1.210	0.994	0.990	0.793	1.290	1.01	0.977
S5	1.100	0.00	0.000	1.090	0.850	0.000	0.000	0.00	0.000
S4	1.210	0.00	0.000	0.773	1.060	0.000	0.000	0.00	0.000
S7	0.994	1.09	0.773	1.010	0.994	1.020	1.030	0.67	1.140
S9	0.990	0.85	1.060	0.994	1.010	1.210	0.601	1.27	0.912
S6	0.793	0.00	0.000	1.020	1.210	0.000	0.000	0.00	0.000
S2	1.290	0.00	0.000	1.030	0.601	0.000	40.000	0.00	0.000
S1	1.010	0.00	0.000	0.670	1.270	0.000	0.000	14.90	0.000
S3	0.977	0.00	0.000	1.140	0.912	0.000	0.000	0.00	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 2 0.00068

SIRE Ty1-INT SIRE Ty1-INT 3 0.00102

clusters with similarity:

Cluster	Number of similarity hits

12	141
4	66
40	37
9	36
166	7
103	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

12	152	0.0988
4	140	0.072
40	65	0.0707
9	25	0.0239
103	12	0.02
3530	7	0.0199
4620	6	0.0171
102	5	0.00701
166	5	0.00968
4240	5	0.0143
1350	4	0.0114
4850	4	0.0115
10500	4	0.0115
8	3	0.00139
53	3	0.00332
1080	3	0.00851
1620	3	0.00855
4660	3	0.00857
4770	3	0.0086
7630	3	0.0086
18	2	0.00125
91	2	0.002
287	2	0.00496
2530	2	0.00568
3330	2	0.0057
4210	2	0.00574
4670	2	0.00571
5070	2	0.00575
17100	2	0.00574
17200	2	0.00574
17600	2	0.00574
18800	2	0.00574
19000	2	0.00574
35800	2	0.00575
37200	2	0.00575
49600	2	0.00575
60800	2	0.00575
66800	2	0.00575
5	1	0.000453
22	1	0.000506
32	1	0.00107
54	1	0.000846
78	1	0.000696
79	1	0.00179
83	1	0.00139
104	1	0.00187
106	1	0.00133
253	1	0.00245
395	1	0.0028
751	1	0.00281
856	1	0.0028
1650	1	0.00284
1730	1	0.00283
2180	1	0.00284
2450	1	0.00285
3330	1	0.00285
4340	1	0.00286
5180	1	0.00286
5390	1	0.00287
6080	1	0.00287
6240	1	0.00288
7180	1	0.00286
8140	1	0.00287
11700	1	0.00287
13600	1	0.00287
14400	1	0.00287
15400	1	0.00287
16000	1	0.00288
18000	1	0.00287
18100	1	0.00288
18400	1	0.00287
20400	1	0.00287
24600	1	0.00287
27100	1	0.00287
46400	1	0.00287
54100	1	0.00287
54500	1	0.00287
59400	1	0.00287
67200	1	0.00287
69600	1	0.00287
69700	1	0.00287
70800	1	0.00287

CL114 ----> CL12

No. of shared pairs: :152

CL114 ----> CL4

No. of shared pairs: :140

CL114 ----> CL40

No. of shared pairs: :65

CL114 ----> CL9

No. of shared pairs: :25

CL114 ----> CL103

No. of shared pairs: :12