Cluster no. 113

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Cluster is part of supercluster: 30

Cluster characteristics:

size 2966
size_real 2966
ecount 66552
supercluster 30
annotations_summary 0.54% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.20% organelle/plastid
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.03% Class_II/Subclass_1/TIR/hAT:hAT-TPase
pair_completeness 0.590348525469169
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00370869858395145
satellite_probability 8.75468016753053e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 10
S4 1
S7 3
S9 12
S6 4
S2 944
S1 960
S3 1030
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0.0 0.0 0 0.0 0.0 0.0
S5 0 5.0 0.0 0.5 0.0 0 102.0 102.0 99.5
S4 0 0.0 0.0 0.0 0.0 0 3.5 2.5 4.0
S7 0 0.5 0.0 0.0 0.5 0 9.5 8.5 8.0
S9 0 0.0 0.0 0.5 2.0 0 37.5 21.0 35.5
S6 0 0.0 0.0 0.0 0.0 0 15.0 21.0 21.0
S2 0 102.0 3.5 9.5 37.5 15 7090.0 6890.0 7500.0
S1 0 102.0 2.5 8.5 21.0 21 6890.0 6860.0 7380.0
S3 0 99.5 4.0 8.0 35.5 21 7500.0 7380.0 8060.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 3.490 0.000 3.990 0.00 0.000 1.010 1.040 0.927
S4 NA 0.000 0.000 0.000 0.00 0.000 1.080 0.782 1.150
S7 NA 3.990 0.000 0.000 12.80 0.000 1.080 0.984 0.853
S9 NA 0.000 0.000 12.800 14.30 0.000 1.190 0.680 1.060
S6 NA 0.000 0.000 0.000 0.00 0.000 0.809 1.150 1.060
S2 NA 1.010 1.080 1.080 1.19 0.809 1.010 0.995 0.998
S1 NA 1.040 0.782 0.984 0.68 1.150 0.995 1.010 0.999
S3 NA 0.927 1.150 0.853 1.06 1.060 0.998 0.999 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 6 0.00202
Ale Ty1-RH Ale Ty1-RH 1 0.00034
SIRE Ty1-RH SIRE Ty1-RH 16 0.00539
hAT hAT-TPase hAT hAT-TPase 1 0.00034

clusters with similarity:

Cluster Number of similarity hits
100 30
200 21
189 4
98 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
200 56 0.112
100 32 0.0395
268 10 0.0235
573 8 0.0204
7 5 0.00275
1980 5 0.0129
23 4 0.00264
57 4 0.00339
6100 4 0.0104
108 3 0.00379
110 3 0.00295
876 3 0.00767
9100 3 0.00781
11900 3 0.00782
20000 3 0.00782
42 2 0.00208
46 2 0.00155
129 2 0.00325
137 2 0.00387
171 2 0.00294
175 2 0.00346
182 2 0.00361
189 2 0.00391
196 2 0.00372
375 2 0.00505
1370 2 0.00514
5070 2 0.00519
5090 2 0.00519
7270 2 0.0052
7710 2 0.00521
13000 2 0.00522
18800 2 0.00522
19600 2 0.00522
22100 2 0.00522
22200 2 0.00522
24500 2 0.00522
29600 2 0.00522
41900 2 0.00522
47300 2 0.00522
55800 2 0.00522
63500 2 0.00522
66100 2 0.00522
67500 2 0.00522
68700 2 0.00522
12 1 0.000636
50 1 0.00169
58 1 0.00104
77 1 0.00161
85 1 0.00113
96 1 0.00108
98 1 0.00126
124 1 0.00166
125 1 0.00115
131 1 0.00139
147 1 0.00122
152 1 0.00134
168 1 0.00146
170 1 0.00186
177 1 0.00201
202 1 0.00218
215 1 0.00247
225 1 0.00207
249 1 0.00241
275 1 0.00224
286 1 0.00236
340 1 0.00243
447 1 0.00247
555 1 0.00256
653 1 0.00255
852 1 0.00255
1030 1 0.00255
1260 1 0.00258
2120 1 0.00258
2140 1 0.00259
3440 1 0.0026
4080 1 0.00259
6290 1 0.00261
7460 1 0.0026
8800 1 0.0026
9090 1 0.0026
11200 1 0.00261
11300 1 0.00261
13100 1 0.00261
13300 1 0.00261
13600 1 0.00261
13600 1 0.00261
14100 1 0.00261
14900 1 0.00261
15300 1 0.00261
15300 1 0.00261
16900 1 0.00261
17800 1 0.00261
19400 1 0.00261
20200 1 0.00261
25000 1 0.00261
27500 1 0.00261
27600 1 0.00261
27800 1 0.00261
28600 1 0.00261
29100 1 0.00261
33700 1 0.00261
33800 1 0.00261
34300 1 0.00261
34700 1 0.00261
35900 1 0.00261
38300 1 0.00261
38700 1 0.00261
38900 1 0.00261
39000 1 0.00261
42100 1 0.00261
44100 1 0.00261
44500 1 0.00261
45600 1 0.00261
50300 1 0.00261
51200 1 0.00261
55100 1 0.00261
55400 1 0.00261
57100 1 0.00261
60000 1 0.00261
61100 1 0.00261
62200 1 0.00261
62200 1 0.00261
66100 1 0.00261
69700 1 0.00261
69900 1 0.00261
71000 1 0.00261

CL113 ----> CL200

image

No. of shared pairs: :56

CL113 ----> CL100

image

No. of shared pairs: :32

CL113 ----> CL268

image

No. of shared pairs: :10