Cluster no. 112

Cluster no. 112

Go back to cluster table

Cluster is part of supercluster: 10

Cluster characteristics:

size	2972
size_real	2972
ecount	29318
supercluster	10
annotations_summary	0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
pair_completeness	0.632967032967033
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000336473755047106
satellite_probability	4.97759293480724e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	991
S4	982
S7	4
S9	0
S6	988
S2	5
S1	2
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0.0	0.0	0.0	0	0.0	0.0	0.0	0
S5	0	3400.0	3400.0	10.5	0	3180.0	14.5	7.5	0
S4	0	3400.0	3430.0	8.5	0	3140.0	12.0	6.5	0
S7	0	10.5	8.5	0.0	0	9.5	0.0	0.0	0
S9	0	0.0	0.0	0.0	0	0.0	0.0	0.0	0
S6	0	3180.0	3140.0	9.5	0	2860.0	8.5	10.0	0
S2	0	14.5	12.0	0.0	0	8.5	1.0	0.0	0
S1	0	7.5	6.5	0.0	0	10.0	0.0	0.0	0
S3	0	0.0	0.0	0.0	0	0.0	0.0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	0.994	0.996	1.080	NA	1.010	1.180	0.915	NA
S4	NA	0.996	1.000	0.874	NA	1.000	0.977	0.794	NA
S7	NA	1.080	0.874	0.000	NA	1.060	0.000	0.000	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	1.010	1.000	1.060	NA	0.990	0.751	1.330	NA
S2	NA	1.180	0.977	0.000	NA	0.751	22.600	0.000	NA
S1	NA	0.915	0.794	0.000	NA	1.330	0.000	0.000	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-RT Ivana Ty1-RT 1 0.00034

clusters with similarity:

Cluster	Number of similarity hits

86	98
24	48

clusters connected through mates:

Cluster	Number of shared read pairs	k

86	229	0.274
24	162	0.17
793	10	0.0289
1320	6	0.0177
62	4	0.00532
4610	3	0.0089
3	2	0.000634
61	2	0.00171
252	2	0.00483
701	2	0.00587
1200	2	0.00585
1540	2	0.00593
3540	2	0.00593
5940	2	0.00596
7170	2	0.00594
8390	2	0.00595
35800	2	0.00597
40300	2	0.00597
41600	2	0.00597
51200	2	0.00597
1	1	0.000487
6	1	0.000336
10	1	0.000522
14	1	0.000515
29	1	0.000729
32	1	0.00108
35	1	0.000763
39	1	0.000774
71	1	0.000792
80	1	0.000931
84	1	0.000926
128	1	0.00105
132	1	0.0022
141	1	0.00196
158	1	0.00257
241	1	0.00245
940	1	0.00296
1010	1	0.00293
2700	1	0.00296
4180	1	0.00297
4590	1	0.00297
5140	1	0.00297
5680	1	0.00297
8300	1	0.00298
9990	1	0.00298
9990	1	0.00298
10400	1	0.00298
12000	1	0.00298
13000	1	0.00298
15700	1	0.00298
16000	1	0.00299
17400	1	0.00298
19000	1	0.00298
20600	1	0.00299
24400	1	0.00299
25600	1	0.00299
26500	1	0.00299
27600	1	0.00299
32500	1	0.00299
41000	1	0.00299
42000	1	0.00299
42700	1	0.00299
42900	1	0.00299
46800	1	0.00299
48000	1	0.00299
53300	1	0.00299
54100	1	0.00299
58700	1	0.00299
59300	1	0.00299
59500	1	0.00299
66600	1	0.00299

CL112 ----> CL86

No. of shared pairs: :229

CL112 ----> CL24

No. of shared pairs: :162

CL112 ----> CL793

No. of shared pairs: :10