Cluster no. 110

Cluster no. 110

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Cluster is part of supercluster: 5

Cluster characteristics:

size	3025
size_real	3025
ecount	51624
supercluster	5
annotations_summary	0.03% Class_II/Subclass_2/Helitron:Helitron-HEL2 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
pair_completeness	0.408942710759199
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000991735537190083
satellite_probability	6.04066957660451e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	8
S5	7
S4	1
S7	8
S9	7
S6	4
S2	931
S1	999
S3	1060

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.0	0.0	0.0	0.5	0.0	0.0	11.0	10.0	15.0
S5	0.0	0.0	0.5	0.0	0.5	0.5	23.0	19.0	19.0
S4	0.0	0.5	0.0	0.0	0.0	0.0	3.0	3.5	6.0
S7	0.5	0.0	0.0	0.0	1.0	0.0	36.5	35.0	50.0
S9	0.0	0.5	0.0	1.0	0.0	0.0	27.5	36.0	33.0
S6	0.0	0.5	0.0	0.0	0.0	0.0	25.0	33.5	33.5
S2	11.0	23.0	3.0	36.5	27.5	25.0	4840.0	5130.0	5710.0
S1	10.0	19.0	3.5	35.0	36.0	33.5	5130.0	5540.0	6060.0
S3	15.0	19.0	6.0	50.0	33.0	33.5	5710.0	6060.0	6590.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	36.700	0.000	0.000	5.600	0.000	0.000	0.958	0.816	1.120
S5	0.000	0.000	31.800	0.000	4.210	4.460	1.200	0.930	0.848
S4	0.000	31.800	0.000	0.000	0.000	0.000	0.754	0.824	1.290
S7	5.600	0.000	0.000	0.000	4.280	0.000	0.969	0.870	1.130
S9	0.000	4.210	0.000	4.280	0.000	0.000	0.917	1.120	0.939
S6	0.000	4.460	0.000	0.000	0.000	0.000	0.883	1.110	1.010
S2	0.958	1.200	0.754	0.969	0.917	0.883	1.000	0.994	1.010
S1	0.816	0.930	0.824	0.870	1.120	1.110	0.994	1.000	1.000
S3	1.120	0.848	1.290	1.130	0.939	1.010	1.010	1.000	0.993

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Helitron Helitron-HEL2 Helitron Helitron-HEL2 1 0.00033

Galadriel Ty3-RH Galadriel Ty3-RH 1 0.00033

clusters with similarity:

Cluster	Number of similarity hits

57	113
143	82
23	70
46	55
11	41
125	34
140	14
116	5
327	2
27	1
96	1
174	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

46	188	0.122
57	176	0.123
23	114	0.0646
140	40	0.0371
327	34	0.0502
143	33	0.0314
116	28	0.0287
7	26	0.0125
152	18	0.0181
11	15	0.008
174	13	0.0156
125	9	0.00803
1780	8	0.0125
1850	7	0.0109
27	4	0.00266
2820	4	0.00626
3080	4	0.00627
5830	4	0.00628
38	3	0.0018
85	3	0.00263
113	3	0.00295
3320	3	0.00471
30	2	0.00122
96	2	0.00169
129	2	0.0023
148	2	0.00199
3160	2	0.00314
6440	2	0.00314
8860	2	0.00314
9180	2	0.00314
32500	2	0.00315
48200	2	0.00315
51200	2	0.00315
60100	2	0.00315
42	1	0.000822
58	1	0.000827
64	1	0.000685
77	1	0.00115
98	1	0.000953
102	1	0.000999
124	1	0.00117
147	1	0.000932
153	1	0.000966
154	1	0.00131
194	1	0.00137
196	1	0.00127
210	1	0.00119
225	1	0.00136
227	1	0.00147
268	1	0.00148
403	1	0.00151
451	1	0.00153
576	1	0.00154
640	1	0.00154
901	1	0.00156
996	1	0.00156
1580	1	0.00156
1810	1	0.00156
1940	1	0.00157
2240	1	0.00157
2250	1	0.00156
2690	1	0.00156
4030	1	0.00157
5250	1	0.00157
5370	1	0.00157
5730	1	0.00157
6050	1	0.00157
6870	1	0.00157
7860	1	0.00157
8100	1	0.00157
9710	1	0.00157
13900	1	0.00157
13900	1	0.00157
18400	1	0.00157
18500	1	0.00157
19200	1	0.00157
22100	1	0.00157
23600	1	0.00157
24000	1	0.00157
25000	1	0.00157
26700	1	0.00157
28900	1	0.00157
29900	1	0.00157
30000	1	0.00157
30600	1	0.00157
31200	1	0.00157
32000	1	0.00157
32400	1	0.00157
32700	1	0.00157
35300	1	0.00157
41200	1	0.00157
42100	1	0.00157
42800	1	0.00157
47400	1	0.00157
48200	1	0.00157
49200	1	0.00157
53300	1	0.00157
53500	1	0.00157
54300	1	0.00157
54900	1	0.00157
56400	1	0.00157
62400	1	0.00157
64100	1	0.00157
65300	1	0.00157
67400	1	0.00157
68400	1	0.00157
70500	1	0.00157

CL110 ----> CL46

No. of shared pairs: :188

CL110 ----> CL57

No. of shared pairs: :176

CL110 ----> CL23

No. of shared pairs: :114

CL110 ----> CL140

No. of shared pairs: :40

CL110 ----> CL327

No. of shared pairs: :34

CL110 ----> CL143

No. of shared pairs: :33

CL110 ----> CL116

No. of shared pairs: :28

CL110 ----> CL7

No. of shared pairs: :26

CL110 ----> CL152

No. of shared pairs: :18

CL110 ----> CL11

No. of shared pairs: :15

CL110 ----> CL174

No. of shared pairs: :13