Cluster no. 107

Cluster no. 107

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3140
size_real	3140
ecount	144893
supercluster	2
annotations_summary	0.19% organelle/plastid
pair_completeness	0.467289719626168
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.292993630573248
satellite_probability	1.34012530867107e-09
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1010
S5	2
S4	3
S7	1080
S9	1020
S6	5
S2	11
S1	2
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	15200.0	61.0	19.5	16900.0	14500.0	80.5	139.0	68.5	4.5
S5	61.0	0.0	0.0	62.0	59.5	0.0	0.5	0.0	0.0
S4	19.5	0.0	0.0	20.0	23.0	0.0	0.0	0.0	0.0
S7	16900.0	62.0	20.0	18600.0	16000.0	93.0	189.0	76.0	6.5
S9	14500.0	59.5	23.0	16000.0	14000.0	77.5	124.0	64.0	3.0
S6	80.5	0.0	0.0	93.0	77.5	0.0	1.0	0.5	0.0
S2	139.0	0.5	0.0	189.0	124.0	1.0	8.0	0.0	0.0
S1	68.5	0.0	0.0	76.0	64.0	0.5	0.0	0.0	0.0
S3	4.5	0.0	0.0	6.5	3.0	0.0	0.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.997	1.030	0.962	1.000	1.000	0.983	0.929	1.01	0.991
S5	1.030	0.000	0.000	0.946	1.050	0.000	0.858	0.00	0.000
S4	0.962	0.000	0.000	0.893	1.190	0.000	0.000	0.00	0.000
S7	1.000	0.946	0.893	1.000	0.994	1.030	1.140	1.02	1.300
S9	1.000	1.050	1.190	0.994	1.010	0.992	0.869	0.99	0.693
S6	0.983	0.000	0.000	1.030	0.992	0.000	1.240	1.37	0.000
S2	0.929	0.858	0.000	1.140	0.869	1.240	5.440	0.00	0.000
S1	1.010	0.000	0.000	1.020	0.990	1.370	0.000	0.00	0.000
S3	0.991	0.000	0.000	1.300	0.693	0.000	0.000	0.00	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 6 0.0019

clusters with similarity:

Cluster	Number of similarity hits

5	3420
22	1050
65	918
139	177
78	29
157	13

clusters connected through mates:

Cluster	Number of shared read pairs	k

5	516	0.212
65	222	0.228
22	47	0.0214
139	37	0.0445
157	36	0.0367
78	18	0.0108
8	10	0.00419
17	5	0.00229
1630	5	0.0087
2320	4	0.00697
9	3	0.00237
91	3	0.00245
253	3	0.00476
472	3	0.00514
762	3	0.00524
7380	3	0.00524
53	2	0.00178
54	2	0.00142
75	2	0.0017
501	2	0.00341
988	2	0.00349
1100	2	0.00347
2410	2	0.00349
5190	2	0.00349
5400	2	0.00349
7410	2	0.0035
8160	2	0.0035
9880	2	0.0035
13400	2	0.0035
16300	2	0.0035
38800	2	0.0035
4	1	0.000461
11	1	0.000552
12	1	0.000568
18	1	0.000547
59	1	0.000573
69	1	0.000591
83	1	0.00106
104	1	0.00132
106	1	0.00103
156	1	0.00164
198	1	0.00133
248	1	0.00156
265	1	0.00158
551	1	0.00172
1660	1	0.00174
5700	1	0.00175
8170	1	0.00175
8890	1	0.00175
8920	1	0.00175
10200	1	0.00175
11300	1	0.00175
11800	1	0.00175
13200	1	0.00175
13800	1	0.00175
16600	1	0.00175
17600	1	0.00175
19400	1	0.00175
25000	1	0.00175
27100	1	0.00175
28700	1	0.00175
30700	1	0.00175
33400	1	0.00175
34600	1	0.00175
38900	1	0.00175
39500	1	0.00175
41100	1	0.00175
48200	1	0.00175
49400	1	0.00175
50600	1	0.00175
64800	1	0.00175
64800	1	0.00175
69000	1	0.00175
69000	1	0.00175

CL107 ----> CL5

No. of shared pairs: :516

CL107 ----> CL65

No. of shared pairs: :222

CL107 ----> CL22

No. of shared pairs: :47

CL107 ----> CL139

No. of shared pairs: :37

CL107 ----> CL157

No. of shared pairs: :36

CL107 ----> CL78

No. of shared pairs: :18

CL107 ----> CL8

No. of shared pairs: :10